https://github.com/PublicHealthDynamicsLab/FRED
Revision a45e04ad99c865724a3c2b1a2d3fd979b3c6be88 authored by John Grefenstette on 07 January 2016, 16:32:02 UTC, committed by John Grefenstette on 07 January 2016, 16:32:02 UTC
1 parent 9bc2dce
Tip revision: a45e04ad99c865724a3c2b1a2d3fd979b3c6be88 authored by John Grefenstette on 07 January 2016, 16:32:02 UTC
working markov epidemic model
working markov epidemic model
Tip revision: a45e04a
Visualization_Layer.h
/*
This file is part of the FRED system.
Copyright (c) 2010-2015, University of Pittsburgh, John Grefenstette,
Shawn Brown, Roni Rosenfield, Alona Fyshe, David Galloway, Nathan
Stone, Jay DePasse, Anuroop Sriram, and Donald Burke.
Licensed under the BSD 3-Clause license. See the file "LICENSE" for
more information.
*/
//
//
// File: Visualization_Layer.h
//
#ifndef _FRED_VISUALIZATION_GRID_H
#define _FRED_VISUALIZATION_GRID_H
#include <vector>
#include "Abstract_Grid.h"
#include "Global.h"
#include "Place.h"
typedef std::pair<double, double> point;
class Visualization_Patch;
class Visualization_Layer : public Abstract_Grid {
public:
Visualization_Layer();
~Visualization_Layer() {}
Visualization_Patch** get_neighbors(int row, int col);
Visualization_Patch* get_patch(int row, int col);
Visualization_Patch* get_patch(fred::geo lat, fred::geo lon);
Visualization_Patch* get_patch(double x, double y);
Visualization_Patch* select_random_patch();
void quality_control();
void add_census_tract(unsigned long long tract);
void initialize();
void create_data_directories(char* vis_top_dir);
void print_visualization_data(int day);
void print_vector_data(char* dir, int disease_id, int day);
void print_population_data(char* dir, int disease_id, int day);
void add_household(Place* h) {
this->households.push_back(h);
}
void print_household_data(char* dir, int disease_id, int day);
// void print_household_data(char* dir, int disease_id, int output_code, char* output_str, int day);
void print_output_data(char* dir, int disease_id, int output_code, char* output_str, int day);
void print_census_tract_data(char* dir, int disease_id, int output_code, char* output_str, int day);
void initialize_household_data(fred::geo latitude, fred::geo longitude, int count);
void update_data(fred::geo latitude, fred::geo longitude, int count, int popsize);
void update_data(double x, double y, int count, int popsize);
void update_data(unsigned long long tract, int count, int popsize);
protected:
Visualization_Patch** grid; // Rectangular array of patches
int max_grid_size; // maximum number of rows or columns
int gaia_mode; // if set, collect data for GAIA
int household_mode; // if set, collect data for households
int census_tract_mode; // if set, collect data for census_tract
// vector<point> infected_households;
// vector<point> all_households;
vector<Place*> households;
};
#endif // _FRED_VISUALIZATION_GRID_H
Computing file changes ...