https://github.com/ctlab/phantasus
Revision a52dacc6da164ea2e8d3b545909638a1f7b1963f authored by Maksim Kleverov on 18 October 2021, 07:25:02 UTC, committed by Space on 18 October 2021, 07:25:02 UTC
1 parent fd649a3
Tip revision: a52dacc6da164ea2e8d3b545909638a1f7b1963f authored by Maksim Kleverov on 18 October 2021, 07:25:02 UTC
split job to steps (check shared files)
split job to steps (check shared files)
Tip revision: a52dacc
collapseDataset.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/collapseDataset.R
\name{collapseDataset}
\alias{collapseDataset}
\title{Collapse dataset}
\usage{
collapseDataset(
es,
isRows = TRUE,
selectOne = FALSE,
fn,
fields,
removeEmpty = TRUE
)
}
\arguments{
\item{es}{Expression set}
\item{isRows}{Work with rows. False if columns (default True - row mode)}
\item{selectOne}{select best match or merge duplicates}
\item{fn}{select/merge function}
\item{fields}{fields to unique on}
\item{removeEmpty}{remove unannotated genes}
}
\value{
Nothing. Collapsed dataset will be assigned to es in environment
}
\description{
\code{collapseDataset} performs a collapse action on expression set
}
\examples{
\dontrun{
es <- getGSE('GSE53986')[[1]]
collapseDataset(es, isRows = TRUE, selectOne = TRUE,
fn = mean, fields = c('Gene ID', 'Gene symbol'))
}
}
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