https://github.com/ctlab/phantasus
Revision a52dacc6da164ea2e8d3b545909638a1f7b1963f authored by Maksim Kleverov on 18 October 2021, 07:25:02 UTC, committed by Space on 18 October 2021, 07:25:02 UTC
1 parent fd649a3
Tip revision: a52dacc6da164ea2e8d3b545909638a1f7b1963f authored by Maksim Kleverov on 18 October 2021, 07:25:02 UTC
split job to steps (check shared files)
split job to steps (check shared files)
Tip revision: a52dacc
gseaPlot.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/gseaPlot.R
\name{gseaPlot}
\alias{gseaPlot}
\title{Returns path to an svg file with enrichment plot}
\usage{
gseaPlot(
es,
rankBy,
selectedGenes,
width,
height,
vertical = FALSE,
addHeatmap = FALSE,
showAnnotation = NULL,
annotationColors = NULL,
pallete = c("blue", "white", "red")
)
}
\arguments{
\item{es}{ExpressionSet object.}
\item{rankBy}{name of the numeric column used for gene ranking}
\item{selectedGenes}{indexes of selected genes (starting from one, in the order of fData)}
\item{width}{width of the image (in inches)}
\item{height}{height of the image (in inches)}
\item{vertical}{whether to use vertical orientation (default: FALSE)}
\item{addHeatmap}{whether to add an expression heatmap, sorted by rankBy (default: FALSE)}
\item{showAnnotation}{a name of column annotation to add to the heatmap, default: NULL (no annotation)}
\item{annotationColors}{a list of colors to use in annotation}
\item{pallete}{a vector of colors to draw heatmap}
}
\value{
path to an svg file
}
\description{
Returns path to an svg file with enrichment plot
}
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