Revision - a679b33 - Stop picking up single jar versions of Picard. - origin: https://github.com/genome/genome

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https://github.com/genome/genome

23 March 2024, 19:04:16 UTC

Revision a679b33ce32e42eae97b46294fdfa42565aeead0 authored by Ian Ferguson on 24 April 2015, 21:00:36 UTC, committed by Ian Ferguson on 24 April 2015, 21:00:36 UTC

Stop picking up single jar versions of Picard.

Prior to version 1.124, Picard was made up as a set of jars, one for
each tool, installed under /usr/share/java/picard-toolsV.VVV/.
Additionally, a support jar would be installed as
/usr/share/java/picard-V.VVV.jar.

Picard versions 1.124 and later use a single jar, installed as
/usr/share/java/picard-V.VVV.jar, to provide all tools.

The Picard GMT was picking up both single- and multi-jar versions of
Picard, even though it could only handle the older multi-jar versions.
This commit should prevent the Picard GMT from picking up the single-jar
versions of Picard (1.124 and later) until single-jar support can be
added.

1 parent 7f3a9f3

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Tip revision: a679b33ce32e42eae97b46294fdfa42565aeead0 authored by Ian Ferguson on 24 April 2015, 21:00:36 UTC
Stop picking up single jar versions of Picard.

Tip revision: a679b33

File	Mode	Size
alignment_summary @ 8932081
bam-readcount @ c044123
bam-window @ 572bfaf
bassovac @ 41b7bc4
bin
bmm @ 311e4d9
breakdancer @ 8f07f3d
configuration-manager @ f719544
copyCat @ 78b25a7
cron @ 584bc07
fqgrep @ fe0206d
genome-db-cosmic @ bdec904
genome-db-omim @ d9b949a
genome-db-pfam @ e5acfb0
genome-env-tests
genome-music
genome-music-testdata @ 860ea75
genome-snapshot-deps @ 7d13e9e
genome-snapshot-testdata @ 72c0ded
genome-sys-user
genome-webserver
genome-www
getopt-complete @ 2dc69f2
gms-config @ 6ccaa62
gmt-sys-vmbuilder
graphite @ 8a08a11
hooks
init
jenkins @ 08335ed
joinx @ e83e763
lib
pairoscope @ 5fdcd27
sciClone @ 723cadc
scripts
sff2fastq @ b815f97
somatic-sniper @ b83aab3
sqitch
tgi-etc @ 08ba1a6
tigra @ 6fe6b74
tigra-sv @ 715dda8
ur @ 4fffe07
varscan @ 83ae9d8
vendor
workflow @ 2d658c9
.gitignore	-rw-r--r--	302 bytes
.gitmodules	-rw-r--r--	9.8 KB
.mailmap	-rw-r--r--	301 bytes
.test-tracker.conf	-rw-r--r--	365 bytes
LICENSE	-rw-r--r--	7.5 KB
README	-rw-r--r--	618 bytes
WHERE_TO_PUT_CODE	-rw-r--r--	2.4 KB
create-c-project.sh	-rwxr-xr-x	2.9 KB
create-project	-rwxr-xr-x	2.9 KB
test-data-relocate-me	l---------	55 bytes

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https://github.com/genome/genome

Stop picking up single jar versions of Picard.

README