https://github.com/stamatak/standard-RAxML
Revision acfd2ac6a5f178cd0ae0d26815c54e386879b390 authored by stamatak on 10 March 2016, 13:34:07 UTC, committed by stamatak on 10 March 2016, 13:34:07 UTC
excessive parentheses that look like this: r,((x,(y,z))),u and transform them into this: r,(x,(y,z)),u -added LG4X bug fix for the PThreads version -added option --bootstop-perms=number that allows for specifying the number of permutation replicates to carry out in the bootstrap convergence test.
1 parent 28c61b9
Tip revision: acfd2ac6a5f178cd0ae0d26815c54e386879b390 authored by stamatak on 10 March 2016, 13:34:07 UTC
-added more verbose tree parser error messages for multi-furcating trees that will help to easily fix ill-formatted trees with
-added more verbose tree parser error messages for multi-furcating trees that will help to easily fix ill-formatted trees with
Tip revision: acfd2ac
File | Mode | Size |
---|---|---|
WindowsExecutables_v8.2.0 | ||
WindowsExecutables_v8.2.4 | ||
WindowsExecutables_v8.2.4_Alternate | ||
manual | ||
usefulScripts | ||
Makefile.AVX.HYBRID.gcc | -rw-r--r-- | 2.3 KB |
Makefile.AVX.MPI.gcc | -rw-r--r-- | 2.2 KB |
Makefile.AVX.PTHREADS.gcc | -rw-r--r-- | 2.9 KB |
Makefile.AVX.PTHREADS.mac | -rw-r--r-- | 2.9 KB |
Makefile.AVX.gcc | -rw-r--r-- | 2.8 KB |
Makefile.AVX.mac | -rw-r--r-- | 2.9 KB |
Makefile.AVX2.HYBRID.gcc | -rw-r--r-- | 2.3 KB |
Makefile.AVX2.MPI.gcc | -rw-r--r-- | 2.2 KB |
Makefile.AVX2.PTHREADS.gcc | -rw-r--r-- | 3.0 KB |
Makefile.AVX2.PTHREADS.mac | -rw-r--r-- | 3.0 KB |
Makefile.AVX2.gcc | -rw-r--r-- | 2.8 KB |
Makefile.AVX2.mac | -rw-r--r-- | 2.9 KB |
Makefile.HYBRID.gcc | -rw-r--r-- | 2.0 KB |
Makefile.MPI.gcc | -rw-r--r-- | 1.9 KB |
Makefile.PTHREADS.gcc | -rw-r--r-- | 2.7 KB |
Makefile.PTHREADS.mac | -rw-r--r-- | 2.7 KB |
Makefile.QuartetMPI.gcc | -rw-r--r-- | 2.7 KB |
Makefile.SSE3.HYBRID.gcc | -rw-r--r-- | 2.1 KB |
Makefile.SSE3.MPI.gcc | -rw-r--r-- | 2.0 KB |
Makefile.SSE3.PTHREADS.gcc | -rw-r--r-- | 2.8 KB |
Makefile.SSE3.PTHREADS.mac | -rw-r--r-- | 2.8 KB |
Makefile.SSE3.QuartetMPI.gcc | -rw-r--r-- | 2.7 KB |
Makefile.SSE3.gcc | -rw-r--r-- | 2.6 KB |
Makefile.SSE3.mac | -rw-r--r-- | 2.7 KB |
Makefile.gcc | -rw-r--r-- | 2.6 KB |
README | -rw-r--r-- | 2.3 KB |
ancestralStates.c | -rw-r--r-- | 27.1 KB |
avxLikelihood.c | -rw-r--r-- | 105.0 KB |
axml.c | -rw-r--r-- | 382.5 KB |
axml.h | -rw-r--r-- | 49.7 KB |
bipartitionList.c | -rw-r--r-- | 168.8 KB |
classify.c | -rw-r--r-- | 71.5 KB |
eigen.c | -rw-r--r-- | 4.7 KB |
evaluateGenericSpecial.c | -rw-r--r-- | 108.8 KB |
evaluatePartialGenericSpecial.c | -rw-r--r-- | 36.8 KB |
fastDNAparsimony.c | -rw-r--r-- | 59.3 KB |
fastSearch.c | -rw-r--r-- | 34.3 KB |
globalVariables.h | -rw-r--r-- | 9.9 KB |
gpl-3.0.txt | -rw-r--r-- | 34.3 KB |
leaveDropping.c | -rw-r--r-- | 39.9 KB |
legacyCode.c | -rw-r--r-- | 22.9 KB |
makenewzGenericSpecial.c | -rw-r--r-- | 133.5 KB |
mem_alloc.c | -rw-r--r-- | 3.0 KB |
models.c | -rw-r--r-- | 192.7 KB |
multiple.c | -rw-r--r-- | 49.7 KB |
newviewGenericSpecial.c | -rw-r--r-- | 230.6 KB |
optimizeModel.c | -rw-r--r-- | 100.1 KB |
parsePartitions.c | -rw-r--r-- | 44.9 KB |
rapidBootstrap.c | -rw-r--r-- | 9.2 KB |
rmq.h | -rw-r--r-- | 416 bytes |
rmqs.c | -rw-r--r-- | 12.5 KB |
rmqs.h | -rw-r--r-- | 2.0 KB |
rogueEPA.c | -rw-r--r-- | 10.2 KB |
searchAlgo.c | -rw-r--r-- | 37.2 KB |
topologies.c | -rw-r--r-- | 17.1 KB |
treeIO.c | -rw-r--r-- | 53.2 KB |
Computing file changes ...