| ad04d54 | James Foucar | 12 October 2021, 21:58:20 UTC | Grab a couple more things from CIME that we will want | 12 October 2021, 21:58:20 UTC |
| e61ea3c | James Foucar | 12 October 2021, 15:34:39 UTC | CIME Update to 4a6b6043888591ab5ecb41360864014eda5862f4 Changes 1) Remove MODEL as a setting for the build system (Use COMP_NAME) 2) remove compare vars dependency in cprnc 3) extend the recent cmake macro changes to allow the inclusion of CMAKE_LANG_COMPILER_VERSION in cmake_macros files - (Should no longer need intel17, intel18 compiler names!) 4) cime_bisect: Improve robustness when using custom script [BFB] | 12 October 2021, 15:34:39 UTC |
| 17a3044 | Azamat Mametjanov | 11 October 2021, 22:34:15 UTC | Merge branch 'azamat/chrysalis/add-lores-f-compset-pelayouts' (PR #4592) Add ne30pg2_EC30to60E2r2 F-compset PE-layouts on Chrysalis Fixes E3SM-Project/E3SM#4588 [BFB] | 11 October 2021, 22:34:15 UTC |
| e17cc6a | James Foucar | 11 October 2021, 16:14:11 UTC | Merge branch 'jgfouca/add_macro_cmakelists' into master (PR #4593) Add CMakeLists.txt to cmake_macros This will be used in the next CIME update for the latest build system features (support for version checking in macros). [BFB] * jgfouca/add_macro_cmakelists: Add CMakeLists.txt to cmake_macros | 11 October 2021, 16:14:11 UTC |
| ab9786b | James Foucar | 11 October 2021, 16:12:16 UTC | Add CMakeLists.txt to cmake_macros This will be used in the next CIME update for the latest build system features (support for version checking in macros). | 11 October 2021, 16:12:16 UTC |
| 9426b05 | Azamat Mametjanov | 09 October 2021, 00:10:56 UTC | Add low-res F-compset PE-layouts on Chrysalis | 09 October 2021, 00:10:56 UTC |
| 2dd516e | Jon Wolfe | 08 October 2021, 14:42:50 UTC | Merge branch 'philipwjones/ocn/del4fix' (PR #4583) Fix allocate error in ocean del4 tracer mixing Fixes a bug in which a temp was being allocated before one of the dimensions was defined, causing a malloc corruption error Because this was a pretty egregious error, it's unlikely any of our current tests actually exercise this code and I could only verify it runs to completion and gives bit-for-bit when del4 is off. Fixes #4581 [BFB] | 08 October 2021, 14:42:50 UTC |
| 4c32474 | James Foucar | 07 October 2021, 19:49:14 UTC | Merge branch 'jgfouca/replace_xml_with_cmake_macros' into master (PR #4537) Major build system enhancement: deprecate config_compilers.xml! This is the most significant change to the case-control system since the cmake-ification (#3043) effort 2 years ago. This PR is a natural follow-on to that effort that further cmake-ifies our build system and reduces technical debt / complexity in the build system by stripping away layers of CIME magic that were not adding much value for us. Specifically, the config_compilers.xml file, which CIME uses to generate the Macros.make and Macros.cmake casedir files (specifies compilers, flags, link flags etc), will be replaced with hierarchical CMake cache files that are persistently stored in our repo. [BFB] * jgfouca/replace_xml_with_cmake_macros: Fix handling of '\!' Add CIME hotfix Use COMP_NAME, not MODEL Sync with latest config_compilers.xml Add support for compiler_os.cmake macros Improve dox for compare-flags compare-flags: make tool more flexible and better output Refresh cache files after upstream merge Add some helper scripts for this effort Update CIME with latest Add support for universal macro Update CIME to bring in new macro capability Remove obsolete comment Add new cmake-based macros | 07 October 2021, 19:49:14 UTC |
| 7628ed0 | Jon Wolfe | 07 October 2021, 14:37:58 UTC | Merge branch 'jonbob/mpaso/fix-xml-cfc' (PR #4580) Fix quotes to agree with XML format Fixes a minor XML issue in the Registry_CFC.xml file in mpas-ocean. This will allow the XML parser we use to autogenerate bld files to work. Fixes #4579 [BFB] | 07 October 2021, 14:37:58 UTC |
| 07ff719 | Gautam Bisht | 07 October 2021, 14:02:23 UTC | Merge branch 'tktesfa2014/lnd/archv2_disag_grd_to_topo_rebase2' (PR #4273) Implementation of topography-based subgrid structure (topounits) and downscaling methods of atmospheric forcing from atmosphere grid to land topounits. It allows variable number of topounits per grid improving computational demand as compared to having the same number of topounits per grid for all grids. Downscaling methods include two approaches of precipitation downscaling developed at PNNL. Also, this branch includes downscaling methods for other atmospheric forcing developed at the University of Arizona. In addition, topounits have been implemented into the dynamic subgrid code and data structures of recent E3SM features such as soil erosion, irrigation and plant hydraulics. [BFB] | 07 October 2021, 14:02:23 UTC |
| 7ce11b0 | Jon Wolfe | 06 October 2021, 15:20:36 UTC | Merge branch 'pbosler/ocean/transport-tests' (PR #4480) Add 2D spherical transport tests for MPAS ocean Add spherical transport tests from Lauritzen, Skamarock, Prather, and Taylor 2012 for MPAS Ocean: * Includes updated namelists and new namelist record transport_tests * Adds the ability to write prescribed velocity fields to the split_explicit and RK4 time integrators. * MPAS-Ocean's existing debugTracers store the 3 passive tracers for * each test. [NML] [BFB] | 06 October 2021, 15:20:36 UTC |
| 08a9a08 | Phil Jones | 05 October 2021, 21:44:19 UTC | fixed allocate error in ocean del4 tracer mixing fixes a bug in which a temp was being allocated before one of the dimensions was defined, causing a malloc corruption error | 05 October 2021, 21:44:19 UTC |
| 4c60c6b | James Foucar | 05 October 2021, 21:08:29 UTC | Fix handling of '\!' | 05 October 2021, 21:08:29 UTC |
| 73c6273 | James Foucar | 05 October 2021, 21:01:27 UTC | Add CIME hotfix | 05 October 2021, 21:01:27 UTC |
| 33da14e | James Foucar | 05 October 2021, 20:49:10 UTC | Use COMP_NAME, not MODEL | 05 October 2021, 20:49:10 UTC |
| b942869 | James Foucar | 05 October 2021, 20:47:46 UTC | Sync with latest config_compilers.xml | 05 October 2021, 20:47:46 UTC |
| abe9fe4 | James Foucar | 05 October 2021, 20:46:09 UTC | Merge remote-tracking branch 'origin/master' into jgfouca/replace_xml_with_cmake_macros * origin/master: (117 commits) Add a new machine named GCP (google cloud platform) to help with running on these virtual clusters. Hommexx/SL: Make compose_ut use just one proc. Hommexx: Fix various warnings. Hommexx: Fix limiters_ut in non-BFB standalone test. Hommexx: Fix some SL and GllFvRemap issues. Hommexx/SL: Fix an implicit capture of 'this'. Split up CIME Fix a few items in LICENSE Fix a few more words on README Few more README fixes Update README for v2 A few updates to CONTRIBUTING Update LICENSE white space cleanup Update CIME to 80220601778 Add timers to driver-mct to provide context to SCORPIO timers white space cleanup Set E3SM default config_AM_conservationCheck_enable false Update to tabular output, add E3SM earth radius Add landIce, iceberg, temperature variables ... | 05 October 2021, 20:46:09 UTC |
| d68726c | noel | 05 October 2021, 19:52:21 UTC | Merge branch E3SM-Project/ndk/machinefiles/add-gcp-gnu (PR #4576) Add a new machine named GCP (google cloud platform) | 05 October 2021, 19:52:21 UTC |
| dbca9d6 | Jon Wolfe | 05 October 2021, 18:56:17 UTC | Fix quotes to agree with XML format | 05 October 2021, 18:56:17 UTC |
| 510049e | Xylar Asay-Davis | 05 October 2021, 17:24:20 UTC | Remove unneeded retrieval of diagnosticsPool in time integration | 05 October 2021, 17:24:20 UTC |
| 40f2811 | Jon Wolfe | 05 October 2021, 17:03:42 UTC | Clean-up on one bld file that gets merged by hand | 05 October 2021, 17:03:42 UTC |
| 2c2095f | The Excavator | 04 October 2021, 21:38:04 UTC | Add a new machine named GCP (google cloud platform) to help with running on these virtual clusters. [bfb] | 04 October 2021, 21:38:04 UTC |
| 9007343 | Balwinder Singh | 04 October 2021, 19:35:21 UTC | Fixed and improved the while loop logic based on the review | 04 October 2021, 19:35:21 UTC |
| 18836f3 | Oksana Guba | 01 October 2021, 17:53:53 UTC | Merge branch 'AMB/ambrad/homme/sl-gpu' into master (PR #4465) This PR brings in two major features: - Semi-Lagrangian tracer transport supports both the F90 theta-l and C++/Kokkos theta-l_kokkos dycores; thus, the second supports SCREAM. The first is at performance parity with master. - Physgrid remap supports both EAM and SCREAM. Again, the first is at performance parity with master. A minor new feature is SL transport supports doubly-periodic planar geometry. This PR also has new tests: - 6 new standalone Homme tests: ne2 and ne6 theta-l vs theta-l_kokkos with SL; - 2 new unit tests: gllfvremap_ut for physgrid remap and compose_ut for SL transport. Finally, this PR makes four unit tests run in standalone Homme optimized builds: gllfvremap_ut, compose_ut, limiters_ut, dirk_ut. [BFB] for EAM. BFB for standalone Homme except: (1) 8 new standalone Homme tests, (2) thetah-sl-dcmip16_test1pg2 in the BFB build, and (3) all three thetah-sl tests in the optimized build. | 01 October 2021, 17:53:53 UTC |
| 19f5dac | Andrew M. Bradley | 01 October 2021, 07:00:22 UTC | Hommexx/SL: Make compose_ut use just one proc. | 01 October 2021, 07:00:22 UTC |
| 2a3f892 | Andrew M. Bradley | 30 September 2021, 08:15:49 UTC | Hommexx: Fix various warnings. | 30 September 2021, 08:16:39 UTC |
| 26f4cb4 | Andrew M. Bradley | 30 September 2021, 06:12:43 UTC | Hommexx: Fix limiters_ut in non-BFB standalone test. There was still a case of 'equal' with a tol of 0, but the tol must be non-0 in the non-BFB build. | 30 September 2021, 06:12:43 UTC |
| 396e852 | Andrew M. Bradley | 30 September 2021, 05:34:50 UTC | Hommexx: Fix some SL and GllFvRemap issues. Fix more HOMMEXX_CUDA_SHARE_BUFFER m_... issues. Also fix a C++17 static_assert so that it's C++11 compliant. | 30 September 2021, 05:34:50 UTC |
| 1b90a6e | Andrew M. Bradley | 30 September 2021, 04:31:11 UTC | Merge upstream/master | 30 September 2021, 04:31:11 UTC |
| 241ce8a | Andrew M. Bradley | 30 September 2021, 04:21:58 UTC | Hommexx/SL: Fix an implicit capture of 'this'. The implicit capture of 'this' would be a problem in Hommexx builds with HOMMEXX_CUDA_SHARE_BUFFER enabled. | 30 September 2021, 04:21:58 UTC |
| 8ce8b97 | Benjamin R. Hillman | 29 September 2021, 20:50:30 UTC | Merge branch 'whannah/mmf/switch-to-L60' (#4485) This includes several major changes to the default MMF configuration, with the primary motivation to improve performance. Recent MMF runs achieved over 5 sypd on Summit, which relied heavily on changes in PRs #4333 and #4476 and the changes in this PR. The configuration changes that allow this enhanced throughput are as follows: - thicker vertical grid spacing near the surface with new L60 vertical grid (with 50 CRM levels) - increased CRM time step (5 to 10 sec) - increased CRM horizontal grid spacing (1 to 2km) - reduced number of radiative columns (16 to 4) [non-BFB] (only for MMF) Conflicts: components/eam/cime_config/config_component.xml | 29 September 2021, 20:50:30 UTC |
| 50e4973 | Jon Wolfe | 29 September 2021, 20:15:14 UTC | Merge branch 'maltrud/ocean/add-cfc-tracers' (PR #4552) Add CFC11, CFC12 tracers This PR adds the capability for the ocean to simulate CFC11 and CFC12 as passive tracers following the OCMIP protocol. This capability is inactive by default and requires a time series of annual average atmospheric mole fractions to be read in as a new stream in streams.ocean. [NML] [BFB] | 29 September 2021, 20:15:14 UTC |
| 1e754ed | Robert Jacob | 29 September 2021, 16:26:30 UTC | Merge branch 'rljacob/docs/update-v2' (PR #4566) Update README, LICENSE and CONTRIBUTING for v2. The DOI for v2 is reserved and won't be active until after the tag is made. Fixes #4134 | 29 September 2021, 16:26:30 UTC |
| 403bdf4 | Robert Jacob | 29 September 2021, 01:38:05 UTC | Split up CIME CIME was split up so make LICENSE reflect that. | 29 September 2021, 01:38:05 UTC |
| 1a547c5 | Robert Jacob | 29 September 2021, 00:17:41 UTC | Fix a few items in LICENSE Also make it more clear what the list of Institutions at the bottom is for. | 29 September 2021, 00:17:41 UTC |
| a4386dc | Robert Jacob | 29 September 2021, 00:04:18 UTC | Fix a few more words on README Fix a few more words on README | 29 September 2021, 00:04:18 UTC |
| cfc0cce | Balwinder Singh | 28 September 2021, 23:59:36 UTC | minor simplification to the time index logic | 28 September 2021, 23:59:36 UTC |
| af31a9c | Robert Jacob | 28 September 2021, 21:58:50 UTC | Few more README fixes Few more README fixes | 28 September 2021, 21:58:50 UTC |
| b7559c6 | Robert Jacob | 28 September 2021, 19:38:17 UTC | Update README for v2 Update the README using the reserved DOI for v2. Also point to Confluence documentation and github discussions. | 28 September 2021, 19:38:17 UTC |
| b5428d9 | Robert Jacob | 28 September 2021, 19:37:17 UTC | A few updates to CONTRIBUTING A few minor wording updates to CONTRIBUTING | 28 September 2021, 19:37:17 UTC |
| b91eb73 | Robert Jacob | 28 September 2021, 19:15:31 UTC | Update LICENSE Update paths to seperable components and mention new ones. | 28 September 2021, 19:15:31 UTC |
| 52cd483 | Mark Petersen | 28 September 2021, 19:01:20 UTC | white space cleanup | 28 September 2021, 19:01:20 UTC |
| b1909c0 | Robert Jacob | 28 September 2021, 15:55:20 UTC | Merge branch 'worleyph/driver-mct/add_io-related_timers2' (PR #4561) SCORPIO has introduced some new timers. Unfortunately, the existing timers in driver-mct are not sufficient to localize where the SCORPIO calls are coming from. Here new timers are added to provide the missing context. A few timers are also added to provide context for these added timers and for some of the already existing timers. While 25 new timers are introduced, in normal usage only 7 to 11 new timers appear in the timing files. Four existing timers were renamed in order to add a CPL prefix: comp_init_cc_iac => CPL:comp_init_cc_iac driver_rofpost_histaux => CPL:seq_hist_writeaux-r2x DRIVER_ROFPOST_BARRIER => CPL:ROFPOST_BARRIER DRIVER_ROFPOST => CPL:ROFPOST Two existing timers were renamed to eliminate collisions from the previous renamings: CPL:ROFPOST_BARRIER => CPL:ROFRUNPOST_BARRIER CPL:ROFPOST => CPL:ROFRUNPOST Fixes #4522 [BFB] | 28 September 2021, 15:55:20 UTC |
| 4735cee | Robert Jacob | 28 September 2021, 15:50:54 UTC | Merge branch 'rljacob/cime/update-sep-27' (PR #4564) Update cime to master version 80220601778 post cime6.0.9 tag E3SM-relevant changes Fix PGN and TSC tests Allow E3SM to use cmake macros instead of config_compilers (not yet active) Fix scripts_regression_tests on mappy for e3sm Other changes: Adds a container machine definition for CESM update modules and build flags on cori for CESM if nuopc and any datamodel add a cdeps directory [BFB] | 28 September 2021, 15:50:54 UTC |
| 6a6f819 | Jon Wolfe | 28 September 2021, 14:49:29 UTC | Merge branch 'mark-petersen/ocean/conservation-am' (PR #4521) Add ocean conservation analysis member This analysis member conducts internal checks on conservation of heat, salinity, and mass (volume), to ensure that changes within the domain are consistent with the sum of boundary fluxes. [NML] [BFB] | 28 September 2021, 14:49:29 UTC |
| c9ecfc9 | Balwinder Singh | 28 September 2021, 05:48:37 UTC | Adds a while loop to compute time index for all the cases | 28 September 2021, 05:48:37 UTC |
| 2944aaa | Robert Jacob | 27 September 2021, 22:51:09 UTC | Update CIME to 80220601778 Update cime to master version 80220601778 post cime6.0.9 Fix PGN and TSC tests Allow E3SM to use cmake macros instead of config_compilers. Fix scripts_regression_tests on mappy for e3sm | 27 September 2021, 22:51:09 UTC |
| 764f276 | Balwinder Singh | 27 September 2021, 22:46:05 UTC | Addresses reviewers comments, still needs cleanup | 27 September 2021, 22:46:05 UTC |
| bac74e2 | Patrick Worley | 27 September 2021, 11:05:03 UTC | Add timers to driver-mct to provide context to SCORPIO timers SCORPIO has introduced some new timers. Unfortunately, the existing timers in driver-mct are not sufficient to localize where the SCORPIO calls are coming from. Here new timers are added to provide the missing context. A few timers are also added to provide context for these added timers and for some of the already existing timers. While 25 new timers are introduced, in normal usage only 7 to 11 new timers appear in the timing files. Four existing timers were renamed in order to add a CPL prefix: comp_init_cc_iac => CPL:comp_init_cc_iac driver_rofpost_histaux => CPL:seq_hist_writeaux-r2x DRIVER_ROFPOST_BARRIER => CPL:ROFPOST_BARRIER DRIVER_ROFPOST => CPL:ROFPOST Two existing timers were renamed to eliminate collisions from the previous renamings: CPL:ROFPOST_BARRIER => CPL:ROFRUNPOST_BARRIER CPL:ROFPOST => CPL:ROFRUNPOST [BFB] | 27 September 2021, 11:05:03 UTC |
| c6d640f | Min Xu | 25 September 2021, 00:11:07 UTC | Merge branch 'minxu74/summit/upd_softenv_compilers' (PR #4502) After recent Summit update, some old versions of the software environment and compilers have been removed. So this PR is to update them to the new default versions or versions that have been tested on Summit. Main updates include: - update PGI to nvhpc/21.3 - update GNU to 9.1.0 - update IBM to 16.1.1-10 - update spectrum-mpi to 10.4.0.3-20210112 - update the '--nrs' parameter for scm. Thanks Azamat. There are still some failed tests for three compilers on Summit, especially for nvhpc. They will be fixed in other PRs. | 25 September 2021, 00:11:07 UTC |
| 69dd789 | Balwinder Singh | 24 September 2021, 18:51:22 UTC | A possible fix for SCM test failure | 24 September 2021, 18:51:22 UTC |
| 7d16a5b | Mark Petersen | 23 September 2021, 20:53:15 UTC | white space cleanup | 23 September 2021, 20:53:15 UTC |
| 5bfdef4 | Mark Petersen | 23 September 2021, 20:31:08 UTC | Set E3SM default config_AM_conservationCheck_enable false | 23 September 2021, 20:31:08 UTC |
| fe6876f | Mark Petersen | 13 September 2021, 16:59:40 UTC | Update to tabular output, add E3SM earth radius | 23 September 2021, 18:34:52 UTC |
| 0881be9 | mark-petersen | 07 July 2021, 00:57:19 UTC | Add landIce, iceberg, temperature variables | 23 September 2021, 17:58:38 UTC |
| 3ad895a | Mark Petersen | 06 July 2021, 21:59:22 UTC | Add E3SM default namelist | 23 September 2021, 17:58:38 UTC |
| bcb164c | Mark Petersen | 06 July 2021, 12:10:28 UTC | Add MPAS-Ocean conservation check analysis member | 23 September 2021, 17:58:38 UTC |
| 83a6073 | noel | 23 September 2021, 17:29:41 UTC | Merge E3SM-Project/ndk/machinefiles/cori-update-cmake2 (PR #4550) For Cori, update cmake module version | 23 September 2021, 17:29:41 UTC |
| 9bec1ac | Azamat Mametjanov | 23 September 2021, 15:25:59 UTC | Merge branch 'azamat/anvil/update-v2-lores-wc-pelayouts' (PR #4556) Update low-res WC pelayouts on Anvil. Also add a pelayout for conusx4v1_r05_oECv3 + F2010. [BFB] | 23 September 2021, 15:25:59 UTC |
| b2728bb | Mark Petersen | 23 September 2021, 13:54:07 UTC | Add CFC to Makefile | 23 September 2021, 13:54:07 UTC |
| 7a2fd6c | Azamat Mametjanov | 22 September 2021, 23:33:46 UTC | Update low-res WC pelayouts on Anvil Also add a pelayout for conusx4v1_r05_oECv3 + F2010 | 22 September 2021, 23:33:46 UTC |
| 35f7817 | Jon Wolfe | 22 September 2021, 21:20:43 UTC | Update autogenerated bld files to be consistent with Registry changes | 22 September 2021, 21:20:43 UTC |
| 95543b2 | Mathew Maltrud | 22 September 2021, 20:45:58 UTC | corrected units to mol/m3 for CFC fields | 22 September 2021, 20:45:58 UTC |
| 6400da0 | Mathew Maltrud | 22 September 2021, 20:20:15 UTC | add CFC11, CFC12 tracers | 22 September 2021, 20:20:15 UTC |
| b1c7832 | Jon Wolfe | 22 September 2021, 15:21:15 UTC | Merge branch 'akturner/seaice/ridging-1D-testcase' (PR #4525) Added 1D ridging sea ice test case Updates to mpassi to include: * Add 1D ridging test case * New ridging init option * Allow special boundaries to set tracers * Fix test case locations in scripts * Update .gitignore for mpas-seaice * Rename config_use_special_boundaries_zero_tracers to config_use_special_boundaries_tracers [NML] [BFB] | 22 September 2021, 15:21:15 UTC |
| fc3a10c | Balwinder Singh | 22 September 2021, 04:01:09 UTC | Merge branch 'singhbalwinder/machinefiles/contance-intel1905' (PR #4530) Updates Intel's compiler version of PNNL cluster Constance Constance now uses Intel/19.0.5 [BFB] * singhbalwinder/machinefiles/contance-intel1905: Adds LD_LIBRARY_PATH for gcc compiler Modifies Intel version from 15 to 19.0.5 | 22 September 2021, 04:01:09 UTC |
| 09aff51 | noel | 21 September 2021, 23:21:56 UTC | for cori, update cmake version | 21 September 2021, 23:21:56 UTC |
| 995c3ec | Robert Jacob | 21 September 2021, 16:32:43 UTC | Merge branch 'whannah/atm/remove-se_fv_nphys' (PR #4545) se_fv_nphys is an old variable from the original physgrid implementation that is no longer needed. [BFB] | 21 September 2021, 16:32:43 UTC |
| 7e705ac | Robert Jacob | 21 September 2021, 16:31:03 UTC | Merge branch 'rljacob/coupler/fix-hist-write' (PR #4544) Move the auxilary history writes to the cime_run_write_history routine and remove the duplicate regular history write from cime_run. Add one argument to cime_run_write_history Fixes #4519 [BFB] | 21 September 2021, 16:31:03 UTC |
| 63710df | Jon Wolfe | 21 September 2021, 14:45:36 UTC | Merge branch 'maltrud/ocean/add-ideal-age' (PR #4487) Add ideal age tracer Add classic ideal age as a new passive tracer to the ocean, which is used to help trace ocean ventilation, for example. The tracer source is effectively just an increment of dt, and the surface value is reset to zero in the top layer every timestep (except for under ice shelves). This feature is turned off by default. [NML] [BFB] | 21 September 2021, 14:45:36 UTC |
| 1c57f1b | Peter Schwartz | 20 September 2021, 18:23:49 UTC | Merge branch 'bishtgautam/lnd/fix-water-budget' (PR #4536) The water states are set to zero for budgets with following temporal resolution: instantaneous daily monthly annual [BFB] | 20 September 2021, 18:23:49 UTC |
| 3fd22a0 | Peter Schwartz | 20 September 2021, 18:22:57 UTC | Merge branch 'fmyuan/fix_shr_file_freeUnit'(PR #4400) When code building with -DCPL_BYPASS, an option heavily used by ELM modelers, that '#ifndef ... #endif' causes 'mlog' and 'c_mprof_file' not initialized, and later cause unit free error in cime_final(): L3685-3686. [BFB] | 20 September 2021, 18:22:57 UTC |
| 673c20f | Walter Hannah | 17 September 2021, 21:46:34 UTC | remove se_fv_nphys modified: components/eam/bld/build-namelist modified: components/eam/bld/namelist_files/namelist_definition.xml | 17 September 2021, 21:46:34 UTC |
| 812d1f6 | Balwinder Singh | 17 September 2021, 20:13:10 UTC | Merge branch 'worleyph/eam/add_io-related_timers' (PR #4500) Add timers to EAM to provide context to SCORPIO timers SCORPIO has introduced some new timers. Unfortunately, the existing timers in EAM are not sufficient to localize where the SCORPIO calls are coming from. Here new timers are added to provide the missing context. A few timers are also added to provide context for these added timers and for some of the already existing timers. The logic for the timer physpkg_st1 is also changed, so that the count during the initialization is '1' instead of '2', and the count is halved in the run loop. Also, some places have timer names in double quotes in calls to t_startf/t_stopf and some have them in single quotes. Changed double quotes to single quotes in some files, to impose consistency within the file. Finally, a timer name typo (prim_run_sybcycle) is corrected (to prim_run_subcycle). For an initial run, 28 new timers are introduced into the initialization and 13 new timers are introduced into the run loop. Comparing the number of lines in the process 0 timing file for a watercycle case, there are 41 more lines of timer data after implementing these modifications, in agreement with the new timer count. For a continuation run, 30 new timers are introduced into the initialization and 13 new timers are introduced into the run loop. Comparing the number of lines in the process 0 timing file for a watercycle case, there are 43 more lines of timer data after implementing these modifications, in agreement with the new timer count. Fixes #4469 BFB * worleyph/eam/add_io-related_timers: Add timers to EAM to provide context to SCORPIO timers | 17 September 2021, 20:13:10 UTC |
| e8d2c08 | Walter Hannah | 17 September 2021, 17:52:13 UTC | update initial conditions file names modified: components/eam/bld/namelist_files/namelist_defaults_eam.xml | 17 September 2021, 17:52:13 UTC |
| 63d9136 | Walter Hannah | 17 September 2021, 17:26:01 UTC | revert grid domain fix | 17 September 2021, 17:26:01 UTC |
| 4707fc0 | Walter Hannah | 17 September 2021, 17:25:10 UTC | remove temporary land spinup files modified: components/elm/bld/namelist_files/namelist_defaults.xml | 17 September 2021, 17:25:10 UTC |
| 20d6e0e | Walter Hannah | 17 September 2021, 17:21:13 UTC | fix mask for e120pg2_ne120pg2 for domain file error modified: cime_config/config_grids.xml | 17 September 2021, 17:21:13 UTC |
| 416f203 | Jon Wolfe | 17 September 2021, 15:20:44 UTC | Merge branch 'jonbob/scripts/fix-fcase-layout-anvil' (PR #4541) Change default layout for ne30pg2_oECv3 F-cases on anvil Sets a default 288-pe layout for F-cases on anvil using a ne30pg2_oECv3 grid (or ne30pg2_r05_oECv3). Previously there was not a defined layout for these configurations and they ended up using a basic 144-pe layout that fails testing, probably due to memory issues. Fixes #4538 [BFB] | 17 September 2021, 15:20:44 UTC |
| 95ea11c | Wuyin Lin | 17 September 2021, 13:45:13 UTC | Merge branch 'wlin/lnd/update_simyr2010_fsurdat_ne30pg2_ne1024pg2' (PR #4543) Update simyr2010 lnd surfdata map for ne30pg2 and ne1024pg2 master currently has a simyr2000 surfdata for ne30pg2. The one for ne1024pg2 (c210607) was generated involving some mapping files that do not properly handle land-sea masks. The new surfdata for ne30pg2 includes elevation class information. [BFB] no nightly tests are affected. | 17 September 2021, 13:45:13 UTC |
| ce79d7b | Andrew M. Bradley | 16 September 2021, 22:19:52 UTC | merge upstream to get CircleCI fix | 16 September 2021, 22:19:52 UTC |
| 75f269b | Wuyin Lin | 16 September 2021, 16:14:22 UTC | Change fsurdat for simyr2010 ne30pg2 to one with elevation class info. | 16 September 2021, 16:14:22 UTC |
| d478152 | Patrick Worley | 28 August 2021, 18:22:10 UTC | Add timers to EAM to provide context to SCORPIO timers SCORPIO has introduced some new timers. Unfortunately, the existing timers in EAM are not sufficient to localize where the SCORPIO calls are coming from. Here new timers are added to provide the missing context. A few timers are also added to provide context for these added timers and for some of the already existing timers. The logic for the timer physpkg_st1 is also changed, so that the count during the initialization is '1' instead of '2', and the count is halved in the run loop. Also, some places have timer names in double quotes in calls to t_startf/t_stopf and some have them in single quotes. Changed double quotes to single quotes in some files, to impose consistency within the file. Finally, a timer name typo (prim_run_sybcycle) is corrected (to prim_run_subcycle). For an initial run, 28 new timers are introduced into the initialization and 13 new timers are introduced into the run loop. Comparing the number of lines in the process 0 timing file for a watercycle case, there are 41 more lines of timer data after implementing these modifications, in agreement with the new timer count. For a continuation run, 30 new timers are introduced into the initialization and 13 new timers are introduced into the run loop. Comparing the number of lines in the process 0 timing file for a watercycle case, there are 43 more lines of timer data after implementing these modifications, in agreement with the new timer count. BFB | 16 September 2021, 05:03:12 UTC |
| 09f764b | Robert Jacob | 16 September 2021, 03:44:21 UTC | Remove extra history write and reorg Move the auxilary history writes to the cime_run_write_history routine and remove the duplicate regular history write from cime_run. Add one argument to cime_run_write_history | 16 September 2021, 03:44:21 UTC |
| d44001a | Andrew M. Bradley | 16 September 2021, 02:59:29 UTC | Fix narrowing error again. | 16 September 2021, 02:59:29 UTC |
| 98f71e8 | Andrew M. Bradley | 16 September 2021, 02:58:12 UTC | Fix another narrowing error in gcc 9.3. | 16 September 2021, 02:58:12 UTC |
| 05e91a5 | Andrew M. Bradley | 16 September 2021, 01:18:45 UTC | More fixes for the eam-hommexx test. | 16 September 2021, 01:18:45 UTC |
| febf20a | Andrew M. Bradley | 16 September 2021, 00:50:12 UTC | More fixes for the eam-hommexx test. | 16 September 2021, 00:50:12 UTC |
| a0ffef5 | Wuyin Lin | 16 September 2021, 00:45:54 UTC | Update simyr2010 lnd surfdata map for ne30pg2 and ne1024pg2 master currently has a simyr2000 surfdata for ne30pg2. The one for ne1024pg2 (c210607) was generated involving some mapping files that do not properly handle land-sea masks. [BFB] no nightly tests are affected. | 16 September 2021, 00:45:54 UTC |
| 7287f59 | Andrew M. Bradley | 16 September 2021, 00:06:23 UTC | Another fix for the eam-hommexx test. | 16 September 2021, 00:06:23 UTC |
| cdb5c68 | Andrew M. Bradley | 15 September 2021, 23:51:22 UTC | Fix eam-hommexx test. The CIME eam-hommexx test checks that a Kokkos-based build works. Right now it uses preqx_kokkos. Perhaps in the future we should switch it to theta-l_kokkos. For now, add -DHOMME_ENABLE_COMPOSE when building preqx_kokkos. | 15 September 2021, 23:51:22 UTC |
| 5fd719e | Andrew M. Bradley | 15 September 2021, 23:37:20 UTC | Homme/SL: Fix a narrowing warning. | 15 September 2021, 23:37:20 UTC |
| 74d8bf3 | Robert Jacob | 15 September 2021, 21:32:18 UTC | Merge branch 'origin/wlin/lnd/ne1024pg2_oRRS18to6v3' (PR #4322) This is to support land on ne1024pg2 grid as the atmosphere. River model for this grid configuration continues to use r0125. Land restart file at ne1024pg2 has to use 64bit_data format. To enable, Changes are made to have ELM use the netcdf format as specified via PIO_LND_NETCDF_FORMAT. Existing codes are hardwired to use 64BIT_OFFSET. To support creating large land files at ne1024pg2, mainly restart files, changes are also made to use 8-byte long integer for resolving the fullsize of the data array and indexing the associated segments. Fixes #4311. [BFB] Conflicts: components/elm/bld/namelist_files/namelist_defaults.xml Left it as is on current master: <fsurdat hgrid="ne30np4.pg2" sim_year="2010" use_crop=".false." > lnd/clm2/surfdata_map/surfdata_ne30pg2_simyr2000_c210402.nc</fsurdat | 15 September 2021, 21:32:18 UTC |
| 44d5343 | Robert Jacob | 15 September 2021, 21:03:46 UTC | Merge branch 'rljacob/fix-extra-read' (PR #4523) Make drv_resume a logical and set it to FALSE to prevent read of restart immediately after it is written. Introduce drv_resume_file to use where a filename is really needed. Also add a log message for the real restart read and make the seq_io_read_avs log messages more informative. Fixes #4513 | 15 September 2021, 21:03:46 UTC |
| 680303b | Jon Wolfe | 15 September 2021, 18:25:53 UTC | Change default layout for ne30pg2_oECv3 F-cases on anvil | 15 September 2021, 18:25:53 UTC |
| 2a9c4b6 | Mark Petersen | 08 September 2021, 16:01:08 UTC | Move halo update after ideal age reset | 15 September 2021, 15:29:52 UTC |
| c5e39b9 | Mark Petersen | 08 September 2021, 14:22:37 UTC | Corrections after Maltrud comments. | 15 September 2021, 15:29:52 UTC |
| 51b267d | Mark Petersen | 05 September 2021, 04:38:06 UTC | Correction to halo update | 15 September 2021, 15:29:52 UTC |
| 8785356 | Mathew Maltrud | 01 September 2021, 15:16:55 UTC | Check for ideal age flags | 15 September 2021, 15:29:51 UTC |
| 33045aa | Mathew Maltrud | 31 August 2021, 20:40:02 UTC | corrected top layer tend and default forcing option | 15 September 2021, 15:29:51 UTC |
