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Revision Author Date Message Commit Date
8c3f5fc add ideal age tracer 15 September 2021, 15:29:51 UTC
5341618 Merge branch 'mark-petersen/ocn/fix-diagnostics-landIceFraction' (PR #4518) Add land ice logical to avoid allocation errors Use of land ice variables, which are in packages and may not be allocated, were not protected by if statements. Fixes #4517 [BFB] 15 September 2021, 14:55:46 UTC
24bb118 Merge branch 'rljacob/circleci/fix-compset' (PR #4539) Remove the "A_" from the compset used in the build test to match new v2 standards. [BFB] 14 September 2021, 23:32:12 UTC
6e163cf Change compset name to build Remove the "A_" from the compset name to match new v2 standards. 14 September 2021, 23:00:10 UTC
517a784 Add support for compiler_os.cmake macros 14 September 2021, 19:41:29 UTC
4062f2a merge 091421 master into branch 14 September 2021, 18:27:03 UTC
5955023 Corrects the initial states for water budgets The water states are set to zero for budgets with following temporal resolution: - instantaneous - daily - monthly - annual [BFB] 14 September 2021, 14:35:28 UTC
c85d9f7 Merge branch 'wlin/atm/fix_conusx4v1_f2010' (PR #4535) Reset grid and compset for F2010 tests with RRM The existing bi-grid config for RRM test cannot work with MPASSI. For conusx4v1, continue to use F2010 but changed to use tri-grid conusx4v1_r05_oECv3. For enax4v1 and twpx4v1, continue to use bi-grid but changed compset to F2010-CICE. The current arrangement is based on availability of grid for using MPASSI and the inputdata. [BFB] except for new test with conusx4v1_r05_oECv3 14 September 2021, 12:29:47 UTC
4e12683 Reset grid and compset for F2010 tests with RRM Continue to use F2010 for conusx4v1 but changed to use tri-grid conusx4v1_r05_oECv3. For enax4v1 and twpx4v1, continue to use bi-grid but changed compset to F2010-CICE. The current arrangement is based on availability of grid for using MPASSI and the inputdata. [BFB] except for new test with conusx4v1_r05_oECv3 14 September 2021, 00:32:21 UTC
f377571 Homme/SL: Remove more constexpr usage. 13 September 2021, 23:45:51 UTC
8b6ec26 Homme/SL: Rm constexpr usage on GPU for simplicity. 13 September 2021, 23:28:47 UTC
1a02264 Merge branch 'wlin/atm/cleanup_v2compsets_for_tests' (PR #4488) Update and clean-up compsets for use in test suites Remove obsolete eam and allactive compsets and the associated eam use_case files, and update the compsets used in nightly test suites. All compsets referring to AV1C or v0atm are removed. F20TRC5-CMIP6 and F2010SC5-CMIP6 are no more needed (previously retained for ongoing testings). Remaining use case files referring to av1c are removed, including those used by MMF tests. Also Remove obsolete use_case files referring to cam3 and cam4 . This PR also makes all standard F-cases use prescribed data ice mode of MPASSI. This includes F1850, F1950, F2010, F20TR. The corresponding compsets that use CICE are renamed as F1850-CICE, F1950-CICE, F2010-CICE, and F20TR-CICE, respecticely. The F####-CICE compsets set to go with SROF while the MPASSI counterparts with MOSART as river component. The following compsets are replaced in nightly test suites. . FC5AV1C-L with F2010 . A_WCYCL1850 and A_WCYCL1850S_CMIP6 with WCYCL1850 . FC5AV1C-H01A with F2010 as there is no v2 compset just for hires . A_WCYCL1950S_CMIP6_HR and A_WCYCL2000_H01AS with WCYCL1950 as a placeholder With compset changes and the use of MPASSI data ice mode, F2010 tests using ne4_ne4 change to use ne4_oQU240, and ne4pg2_ne4pg2 to ne4pg2_oQU480; F2010 tests with ERS_Ln# and ERP_Ln# change to use ERS_Ld3. [non-BFB] Virtually for all tests involving the compsets above. Tests using the old compsets would appear missing while new tests would appear correspondingly. 13 September 2021, 16:41:43 UTC
7d6fa20 Replaced F2010 ERP_Ln# tests with ERP_Ld3 12 September 2021, 02:21:26 UTC
423d109 Adds LD_LIBRARY_PATH for gcc compiler 11 September 2021, 07:21:16 UTC
b9ca46e Improve dox for compare-flags 10 September 2021, 22:23:42 UTC
12b18e0 compare-flags: make tool more flexible and better output 10 September 2021, 22:09:23 UTC
c06d4ce Remove cam4 use cases files 10 September 2021, 20:52:33 UTC
6b4518c Refresh cache files after upstream merge Do NOT use MODEL as a selector in config_compilers.xml, use COMP_NAME instead. 10 September 2021, 20:14:34 UTC
39479af Add some helper scripts for this effort 10 September 2021, 20:12:21 UTC
66318c3 Remove some unused use cases 10 September 2021, 19:12:13 UTC
6dba9f4 Update MMF F-cases to F2010 10 September 2021, 18:57:05 UTC
0f5c969 Update MMF use case files for 2010 forcings 10 September 2021, 18:56:38 UTC
81d444d Update CIME with latest 10 September 2021, 18:17:50 UTC
31c32e4 Fix whitespace/alignment Fix some whitespace/alignment on a couple of lines. 10 September 2021, 03:04:11 UTC
2df6d40 Add support for universal macro 09 September 2021, 22:42:07 UTC
f14cc50 Update CIME to bring in new macro capability 09 September 2021, 21:34:16 UTC
3f2969c Remove obsolete comment 09 September 2021, 19:56:55 UTC
6140f82 Merge remote-tracking branch 'origin/master' into jgfouca/replace_xml_with_cmake_macros * origin/master: (38 commits) Fix the CircleCI script that installs Singularity Undo cime subm update Fix some stale CMake paths clean up crm_history revert changes to crm interface rad variables another bug fix bug fix Add check for icol bounds be more careful about ncol vs pcol change icrm to icol in crm_history Add trim to be safe Cosmetic update from PR review Minor bug fixes and clean up switch outfld calls from pcols to ncol more bug fixes and clean up Refactor crm_history bug fix rework handling of ECPP output bug fix update SAM/SAMOMP interface ... 09 September 2021, 19:02:34 UTC
2ee5845 Merge branch 'whannah/mmf/push-chunk-loop-crm-physics' (#4476) This refactors the way the CRM is called so that all CRM instances in a single task can be run at once on the GPU, rather than all CRMs in a given "chunk". On properly configured GPU cases the speedup from this change is significant, and there is no notable change to CPU configurations tested on Summit and Cori-KNL. The changes required to push the chunk loop down are quite substantial, but there were additional complications from the crm_history() subroutine and the crm_rad and crm_ecpp_output data structures that required more extensive changes. A new "ncrms" variable is defined in crm_physics to define the dimension of variables that hold all CRMs in a task (i.e. combined across all chunks in a task). Note about testing - the changes are non-BFB for MMF tests only because the grouping of CRM columns has changed, which changes the the time step and sedimentation subcycling. Otherwise the changes are BFB, which can be demonstrated using the mmf_fixed_subcycle test mod. [BFB] - except for MMF tests without mmf_fixed_subcycle test mod 09 September 2021, 18:31:34 UTC
f2f1eba Merge branch lukaszlacinski/lukaszlacinski/circleci (PR #4528) This PR removes a bug that was introduced with the last PR that added a backup HTTP server with the Singularity source code tarball. 09 September 2021, 17:52:25 UTC
9a5dab5 Merge branch 'jgfouca/fix_cimeroots' into master (PR #4526) Fix CIMEROOTs for buildnml scripts It looks like these did not get updated when the scripts moved to E3SM. Also, remove old python module load from mappy env. [BFB] * jgfouca/fix_cimeroots: Undo cime subm update Fix some stale CMake paths Fix CIMEROOTs for buildnml scripts 09 September 2021, 17:08:37 UTC
e0d6219 Removed gust_export testmod dir 09 September 2021, 16:17:42 UTC
a120bae Fixed F2010 ERS tests on ne4 and ne4pg2 with _Ln# replaced with _Ld3 09 September 2021, 16:12:58 UTC
52167a2 Fix the CircleCI script that installs Singularity 09 September 2021, 16:11:05 UTC
f47bb19 Merge branch 'proteanplanet/seaice/v2cryoalignment' (PR #4524) Align sea ice settings of SOwISC12to60E2 and WCAtl12to45E2 with WC14to60 This aligns the E3SM V2 Cryospheric campaign regionally-refined Southern Ocean mesh with the V2 Water Cycle WC14 mesh settings for sea ice. Thus the Antarctic regionally-refined settings in E3SM would become consistent with the Arctic settings, and vice versa. The two changes made are that the number of iterations in the atmospheric flux calculations use 10 not 5 iterations, and high-frequency coupling is switched on, which means that a transient Ekman solution is permitted in the sea ice model. [BFB] for all tested configurations 09 September 2021, 15:49:38 UTC
bc45dc5 Merge branch 'lukaszlacinski/circleci' (PR #4508) Add the NERSC HTTP as a primary server with the Singularity source code tarball and use the ALCF Petrel HTTP server as a backup server. If the CircleCI test script fails when downloading the tarball from the server, the script falls back to the ALCF Petrel HTTP server. 09 September 2021, 15:38:20 UTC
a7c0047 Merge branch 'njeffery/mpas-seaice/zero-aerosol-coupling' (PR #4515) Zeroed out dummy ocean concentrations of aerosols This is a fix to issue #4514 : Sea ice receives negative ocean concentrations of aerosols when zaerosols are active in MPAS-seaice. Without this fix, the code crashes with a negative concentration error in the sea ice when zaerosols are active. Fixes #4514 [BFB] in all tested configurations 09 September 2021, 15:40:46 UTC
d0d2eb4 Replaced ne4_ne4 with ne4_oQU240 and ne4pg2_ne4pg2 with ne4pg2_OQU480 for F2010 tests. Added compset WCYCL1850NS for testing on small grids without spun-up ICs for ocean/ice. Removed eam-gust_param and eam-gust_export that are not needed for EAMv2. 09 September 2021, 00:38:11 UTC
e1aa52b Undo cime subm update 08 September 2021, 23:01:35 UTC
5dcf1b6 Fix some stale CMake paths 08 September 2021, 22:57:53 UTC
7cc7a61 Fix comments and spacing Fix comments and spacing in response to review. 08 September 2021, 21:32:52 UTC
8791efc Merge remote-tracking branch 'origin/jgfouca/fix_cimeroots' into jgfouca/replace_xml_with_cmake_macros * origin/jgfouca/fix_cimeroots: (21 commits) Fix CIMEROOTs for buildnml scripts Update CIME submodule Run ne4-grid cases on single-node Replace run_e3sm template Run F-MMFOMP OpenMP-offload case without multithreading Fixing path for ocn grid domain file Replace or remove settings for deprecated MPAS grids Add initial cmake machinefiles for perlmutter and cori-gpu. No impact on other machines. [bfb] Run ibmgpu builds with 42 tasks/node in SMT1 mode Fixing stray present clause on OMP directive Cleanup pgigpu on Ascent Adding documentation for source of arrays in diagnostics Cleanup of OpenACC in diagnostics to note which arrays need to be brought in for each subroutine Expanding OpenACC region in diagnostics to cover the entire routine with the exception of one difficult loop. Data required to be on device is moved there at top of routine and data that needs to be updated on host is moved back at the end of the routine Adding OpenACC to Wright EOS and finishing OpenACC in EOS routines Adding OpenACC to Linear EOS and fixing incorrect results Extending OpenACC code in JM EOS Making ocnEqStatePRef device only in JM EOS Update builds on Ascent Remove deprecated MPAS grids from the scripts Remove LANDM_COSLAT from topo tools ... 08 September 2021, 21:04:18 UTC
90fd936 Fix CIMEROOTs for buildnml scripts It looks like these did not get updated when the scripts moved to E3SM. Also, remove old python module load from mappy env. [BFB] 08 September 2021, 19:39:49 UTC
012a712 clean up crm_history modified: components/eam/src/physics/crm/crm_history.F90 08 September 2021, 16:36:27 UTC
9bf83e2 revert changes to crm interface rad variables modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/samomp/crm_module.F90 08 September 2021, 16:36:27 UTC
68972f6 another bug fix 08 September 2021, 16:36:27 UTC
35392b0 bug fix 08 September 2021, 16:36:27 UTC
1924365 Add check for icol bounds 08 September 2021, 16:36:27 UTC
b80ab9c be more careful about ncol vs pcol 08 September 2021, 16:36:27 UTC
5ea43a9 change icrm to icol in crm_history 08 September 2021, 16:36:27 UTC
4d28b8e Add trim to be safe 08 September 2021, 16:36:27 UTC
d670d02 Cosmetic update from PR review 08 September 2021, 16:36:27 UTC
3c58ed1 Minor bug fixes and clean up modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/physpkg.F90 08 September 2021, 16:36:18 UTC
e46c12c switch outfld calls from pcols to ncol modified: components/eam/src/physics/crm/crm_history.F90 08 September 2021, 16:35:22 UTC
9a191bf more bug fixes and clean up modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:35:22 UTC
08fd70c Refactor crm_history modified: components/eam/src/physics/crm/crm_history.F90 08 September 2021, 16:35:22 UTC
0b2ecd0 bug fix modified: components/eam/src/physics/crm/physpkg.F90 08 September 2021, 16:35:21 UTC
c556c11 rework handling of ECPP output modified: components/eam/src/physics/crm/crm_ecpp_output_module.F90 modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/physpkg.F90 08 September 2021, 16:34:50 UTC
7f6f3ad bug fix 08 September 2021, 16:24:35 UTC
1eb27e5 update SAM/SAMOMP interface modified: components/eam/src/physics/crm/crm_physics.F90 modified: components/eam/src/physics/crm/sam/crm_module.F90 modified: components/eam/src/physics/crm/samomp/crm_module.F90 08 September 2021, 16:24:35 UTC
d0e6989 Refactor post-CRM-run section modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:35 UTC
77aead4 clean up CRM run section 08 September 2021, 16:24:35 UTC
b71ef38 refactor non-first-step init section modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:35 UTC
c098839 clean up some first step stuff modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:35 UTC
2aacd96 refactor init and first_step sections of crm_physics_tend modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:35 UTC
debc67e update crm_physics_tend local variables modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:35 UTC
8419c4d Clean up crm_physics_tend interface modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:34 UTC
e44051a white space change 08 September 2021, 16:24:34 UTC
8328332 single use statement for ppgrid modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:34 UTC
0dce59f Apply new pbuf indices modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:34 UTC
ed8d790 minor change to CRM register and init routines modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:34 UTC
8dc4944 Add global variance transport index variables modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:34 UTC
421d83b refactor crm_physics_tend call in phys_run1 modified: components/eam/src/physics/crm/physpkg.F90 08 September 2021, 16:24:34 UTC
ade3d31 Add public ncrms variable modified: components/eam/src/physics/crm/crm_physics.F90 08 September 2021, 16:24:33 UTC
4afd400 This commit adds WCAtl12to45E2r4 to the regionally-refined MPAS-SI configurations 08 September 2021, 16:23:59 UTC
eebdd69 initialize precip_downscaling_method on the atmosphere side to UNSET 08 September 2021, 03:54:17 UTC
2cc4e6f Align sea ice settings of SOwISC12to60E2r4 with WC14to60 08 September 2021, 03:45:57 UTC
5cb4bce Add more info to log message for seq_io_read_avs When a restart file is read, include info about which avs are being read. Also fix the subname for seq_io_read_avscomp. 08 September 2021, 00:09:55 UTC
58c5fbf Separate drv_resume file and logical Make drv_resume a logical and use it to determine if a restart file should be read. Introduce drv_resume_file and use it where drv_resume was assumed to be a filename. Also add a log message for the real restart read at the start of a run. Fixes #4513 08 September 2021, 00:06:29 UTC
f5528f0 Change land ice logic flags from Off to On 07 September 2021, 19:59:21 UTC
c0eec93 Merge branch 'jgfouca/cime_update_2021_09_03' into master (PR #4516) Update CIME submodule to e3274c2ffcd1ce5821499d33484d6b9384ee73b6 Changes: 1) Support the creation of multiple user_nl files for a component 2) Allow multiple methods for running CIME unit tests 3) handle neon input data better by first checking the neon server 4) changes to have new user_nl_stream_xxx for cdeps 5) moab driver in src/drivers/moab is no longer needed, so it's been removed. Fixes: 1) pbs doesnt allow some compset characters in job name 2) fix an issue with file locks when not run from caseroot 3) Fix namelist duplications 4) Fixes provenance in git worktree 5) make sure CLM_USRDAT_NAME is not UNSET if set [BFB] 07 September 2021, 18:23:05 UTC
081942d add land ice logical to avoid errors 04 September 2021, 22:58:46 UTC
94a89d0 Adds info data code for sending land model flags to atm model 04 September 2021, 06:35:38 UTC
56e95aa add -DTHRUST_IGNORE_CUB_VERSION_CHECK in CPPDEF avoid the inconsistency of the version of CUB in your include path for the GNUGPU complier 03 September 2021, 22:04:01 UTC
7efc99d Homme/SL: Fix old HAVE_CUDA uses. 03 September 2021, 21:43:16 UTC
596b667 Merge branch 'azamat/ascent/update-builds' (PR #4473) Update builds on Ascent: * machine-specific updates to modules, compiler flags, Depends files * run ibmgpu builds with 42 tasks/node in SMT1 mode * run F-MMFOMP OpenMP-offload case without multithreading * add single-node pelayout for ne4np4.pg2 grid Addresses E3SM-Project/E3SM#4458 [BFB] 03 September 2021, 19:39:01 UTC
ca59343 Update CIME submodule to e3274c2ffcd1ce5821499d33484d6b9384ee73b6 Changes: 1) Support the creation of multiple user_nl files for a component 2) Allow multiple methods for running CIME unit tests 3) handle neon input data better by first checking the neon server 4) changes to have new user_nl_stream_xxx for cdeps 5) moab driver in src/drivers/moab is no longer needed, so it's been removed. Fixes: 1) pbs doesnt allow some compset characters in job name 2) fix an issue with file locks when not run from caseroot 3) Fix namelist duplications 4) Fixes provenance in git worktree 5) make sure CLM_USRDAT_NAME is not UNSET if set [BFB] 03 September 2021, 19:13:09 UTC
cf9781e Merge branch 'jonbob/scripts/remove-deprecated-mpas-grids' (PR #4467) Remove deprecated MPAS grids from E3SM scripts Removes grids no longer supported by the MPAS ocn/ice components, either because they have been determined to be unnecessary or have been replaced. The deprecated grids are: * mpasgx1 * mpas120 * oEC60to30 * oEC60to30wLI * oRRS30to10 * oRRS30to10wLI * oRRS18to6 Please note we would like to drop the oRRS15to5 as well, but it is being used by SCREAM/high-res atm [BFB] for all current tests 03 September 2021, 14:40:46 UTC
10f985d remove lines for supporting c++14 for the old xl The old xl used the gcc/8.1.1 that did not support c++14. But the new xl/16.1.1-10 is using gcc/8.3.1 with the c++14 support 03 September 2021, 12:18:56 UTC
3dc3f32 Restored compset BGWCYCL1850 and replaced AV1C-L phys 03 September 2021, 03:49:00 UTC
26b2646 Zeroed out dummy ocean concentrations of aerosols This fix prevents erroneous aerosol fluxes between the ocean and ice which causes the code to crash with active z-aerosols in sea ice. BFB in all other configurations. 02 September 2021, 22:11:36 UTC
265276c Add new cmake-based macros 02 September 2021, 21:31:06 UTC
4b10660 Merge branch 'brhillman/remove-landm' (PR #4384) Remove the LANDM variable from the COMSRF module and replace all uses with cam_in%landfrac. LANDM was previously read in from the LANDM_COSLAT variable in the topography dataset. This was a smoothed version of the input topography, but was actually inconsistent with the land fraction data specified by the surface models. Instead of carrying around two versions of land fraction, we opt to remove the LANDM variable and instead use a land fraction consistent with the surface models. This will be BFB for all currently supported configurations except for MMF, where we were still using the old cloud effective radius calculations with LANDM instead of LANDFRAC. Since these are switched over to use LANDFRAC now, the results will be non-BFB but should still be reasonable. Also, any cases using RK microphysics will DIFF because stratiform_tend was also using LANDM, buried down in the findmcnew routine, and also in the effective radii computation. The code was changed here but not tested for this configuration because we do not have a supported configuration for that microphysics package at the moment. Fixes #4276 [non-BFB] only for MMF cases. 02 September 2021, 19:35:36 UTC
6be1207 Merge branch `forsyth2/run_e3sm/replace-template` (PR #4455) Replace run_e3sm template script with most recent version for v2. [BFB] 02 September 2021, 19:29:02 UTC
475fe28 Renamed A_BG1850CN as BG1850CN 02 September 2021, 16:51:43 UTC
97c5292 Remove compsets A_WCYCL1850-DIB_CMIP6 and A_WCYCL1850-DIB-ISMF_CMIP6 A_WCYCL1850-DIB-ISMF_CMIP6 has been replaced by CYRO1850. A_WCYCL1850-DIB_CMIP6 is not needed in v2. 02 September 2021, 16:19:34 UTC
0361c87 Add backup HTTP server with Singularity source tarball 02 September 2021, 13:06:47 UTC
d0af8de Run ne4-grid cases on single-node 02 September 2021, 05:48:04 UTC
8462041 Homme: Change preqx-nlev72 targets to QSIZE_D=40. Then they can be used for the Rosetta stone benchmark. 02 September 2021, 03:51:45 UTC
9cd985d Replace run_e3sm template Replace run_e3sm template script with most recent version for v2. [BFB] 01 September 2021, 23:15:48 UTC
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