Revision adc5944338347c616b11b68e4380146845e1c76a authored by andrewjpage on 14 October 2014, 14:21:30 UTC, committed by andrewjpage on 14 October 2014, 14:21:30 UTC
1 parent 7ab9a74
ChangeLog
2012-11-2 Andrew J. Page <ap13@sanger.ac.uk>
* Prefilters the initial alignment, ignoring sequences with >25% missing data (the '--filter_percentage' parameter lets you vary this).
* SNPs are outputted on a per branch basis in tab format.
* The stats are now on a per branch basis rather than cumulatively built up from walking the tree.
* Node labelling in the recombination tab file now consistent with the tree internal node labels
2012-8-7 Andrew J. Page <ap13@sanger.ac.uk>
* Cleanup intermediate files by default
* Fix RF distance calculation and comparison
2012-4-24 Andrew J. Page <ap13@sanger.ac.uk>
* Initial beta testing version
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