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Revision adf29e860d11a9d1d3ecb06afff81bbf46207d62 authored by vejnar on 19 April 2023, 15:50:13 UTC, committed by vejnar on 19 April 2023, 15:50:13 UTC
Add --suffix to extract command
1 parent 6477465
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  • f4c2bd6
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  • config
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  • labxpipe.json
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labxpipe.json
{
    "path_seq_run": "/plus/data/seq/by_run",
    "path_seq_raw": "/plus/data/seq/raw",
    "path_seq_prepared": "/plus/data/seq/prepared",

    "ref_info_source": ["db"],

    "path_annots": "/plus/data/sai/annots",

    "fastq_exts": [".txt.gz", ".txt.lz4", ".fastq", ".fastq.gz", ".fastq.lz4", ".fastq.zst"],

    "adaptors": {
        "sRNA 1.0": "TCGTATGCCGTCTTCTGCTTGT",
        "sRNA 1.5": "ATCTCGTATGCCGTCTTCTGCTTG",
        "sRNA alt1": "CTGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTG",
        "TruSeq Index": "AGATCGGAAGAGCACACGTCTGAA",
        "TruSeq-DMS Index": "CTGTAGGCACCATCAATAGATCGGAAGAGCACACGTCTGAA",
        "TruSeq-DMS+A Index": "ACTGTAGGCACCATCAATAGATCGGAAGAGCACACGTCTGAA",
        "TruSeq Universal": "AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT",
        "TruSeq D501 Index": "AATGATACGGCGACCACCGAGATCTACACTATAGCCTACACTCTTTCCCTACACGACGCTCTTCCGATCT",
        "BL1 3' Non-multiplex": "CTGTAGGCACCATCAAT",
        "Solexa P3": "AGATCGGAAGAGCGGTTCAGCAGGAATGCC",
        "QuantSeq Fwd Index": "GATCGGAAGAGCACACGTCTGAACTCCAGTCAC"
    }
}
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