| afd0119 | Berke Toptas | 02 May 2018, 19:34:33 UTC | violation regions BED file is added to output list of sample execution | 02 May 2018, 19:34:33 UTC |
| a520e65 | Berke Toptas | 01 May 2018, 21:05:25 UTC | -output files for sample test is renewed -RegionBasedValidator is updated -ReadMe is updated to add --output-violation-regions parameter | 01 May 2018, 21:05:25 UTC |
| 5c1b984 | Berke Toptas | 01 May 2018, 20:32:11 UTC | Readme is updated | 01 May 2018, 20:32:11 UTC |
| f771f78 | Berke Toptas | 01 May 2018, 20:27:27 UTC | -version is updated to 1.1 -changelog is updated | 01 May 2018, 20:27:27 UTC |
| cf5783c | Berke Toptas | 01 May 2018, 15:24:53 UTC | Least variant threshold is decreased to 1 non-ref variant (previously 2 non-ref variants per sample) | 01 May 2018, 15:24:53 UTC |
| 3eea4ba | Berke Toptas | 19 April 2018, 19:21:58 UTC | Region Based Mendelian violation detection is implemented | 19 April 2018, 19:21:58 UTC |
| 59928a6 | Berke Toptas | 18 April 2018, 15:13:46 UTC | Is Directory Exist function is added | 18 April 2018, 15:13:46 UTC |
| 4b3b5a7 | Berke Toptas | 18 April 2018, 14:46:23 UTC | Reference Overlapping violation consolidation algorithm is fixed | 18 April 2018, 14:46:23 UTC |
| 2961054 | Berke Toptas | 14 February 2018, 22:13:20 UTC | vbtvalidation folder is given as link instead of README | 14 February 2018, 22:13:20 UTC |
| 1ae226f | Berke Toptas | 14 February 2018, 22:06:37 UTC | Reference to VBT validation pipeline is added to the README | 14 February 2018, 22:06:37 UTC |
| d132db8 | Berke Toptas | 14 February 2018, 21:54:23 UTC | VBT Validation Pipeline Commit | 14 February 2018, 21:54:23 UTC |
| 20bbf36 | Berke Toptas | 14 February 2018, 16:05:39 UTC | fat is set to NULL with a constructor to prevent destructing it without initialization. | 14 February 2018, 16:05:39 UTC |
| 3cab638 | Berke Toptas | 14 February 2018, 16:01:36 UTC | Parameter specifications are updated | 14 February 2018, 16:01:36 UTC |
| abc4b05 | Berke Toptas | 14 February 2018, 15:42:04 UTC | output directory path expression clarified | 14 February 2018, 15:42:04 UTC |
| e10728f | Berke Toptas | 14 February 2018, 15:39:47 UTC | README sample execution command is corrected. An execution notice is added for clarification | 14 February 2018, 15:39:47 UTC |
| 8c33cde | Berke Toptas | 30 January 2018, 02:40:05 UTC | thread count parameter definition is added nodal mode default value is corrected to explicit | 30 January 2018, 02:40:05 UTC |
| b91084e | Berke Toptas | 25 January 2018, 19:51:15 UTC | MendelianVariantProvider : variants other than diploid are filtered out from comparison BaseVariantProvider - FindOptimalTrimmings : support for monoploid variants are added | 25 January 2018, 19:51:15 UTC |
| 55afdda | Berke Toptas | 25 January 2018, 16:18:38 UTC | readme file is edited | 25 January 2018, 16:18:38 UTC |
| 3143a5c | Berke Toptas | 25 January 2018, 15:24:53 UTC | readme sample run command is updated | 25 January 2018, 15:24:53 UTC |
| 18ac33a | Berke Toptas | 24 January 2018, 16:31:51 UTC | Third party license file is renamed | 24 January 2018, 16:31:51 UTC |
| 9ae87b1 | Berke Cagkan Toptas | 24 January 2018, 16:29:01 UTC | Create LICENSE | 24 January 2018, 16:29:01 UTC |
| 07b4660 | Berke Toptas | 24 January 2018, 16:27:04 UTC | Remove license | 24 January 2018, 16:27:04 UTC |
| 424a19a | Berke Toptas | 24 January 2018, 14:30:05 UTC | gitattributes commit | 24 January 2018, 14:30:05 UTC |
| 72f74bc | Berke Toptas | 24 January 2018, 14:18:36 UTC | 3rd party licenses are modified | 24 January 2018, 14:18:36 UTC |
| 03f4b2c | Berke Toptas | 23 January 2018, 23:14:05 UTC | LICENSE is added | 23 January 2018, 23:14:05 UTC |
| 36108ee | Berke Toptas | 23 January 2018, 23:08:31 UTC | Merge branch 'master' of https://github.com/sbg/VBT-TrioAnalysis | 23 January 2018, 23:08:31 UTC |
| 63b8f5b | Berke Toptas | 23 January 2018, 22:48:18 UTC | CVcfReader GetNextRecordMultiSample() is removed | 23 January 2018, 22:48:18 UTC |
| bca8923 | Berke Toptas | 23 January 2018, 22:43:51 UTC | Merge remote-tracking branch 'sbg-github/master' | 23 January 2018, 22:43:51 UTC |
| 1d16340 | Berke Cagkan Toptas | 23 January 2018, 20:52:24 UTC | Create LICENSE | 23 January 2018, 20:52:24 UTC |
| b486057 | Berke Cagkan Toptas | 23 January 2018, 20:50:10 UTC | Delete LICENSE | 23 January 2018, 20:50:10 UTC |
| 984fba5 | Berke Toptas | 23 January 2018, 20:47:51 UTC | license is removed | 23 January 2018, 20:47:51 UTC |
| ed14948 | Berke Cagkan Toptas | 23 January 2018, 20:46:47 UTC | LICENSE is added | 23 January 2018, 20:46:47 UTC |
| 62a546e | Berke Toptas | 23 January 2018, 20:40:46 UTC | License is corrected | 23 January 2018, 20:40:46 UTC |
| 192b5a3 | Berke Toptas | 23 January 2018, 20:38:16 UTC | .txt extensions are removed from LICENSE | 23 January 2018, 20:38:16 UTC |
| f00db68 | Berke Toptas | 23 January 2018, 20:01:03 UTC | Comments in Merge() are modified | 23 January 2018, 20:01:03 UTC |
| 3d4f233 | Berke Toptas | 23 January 2018, 20:00:32 UTC | project link is updated | 23 January 2018, 20:00:32 UTC |
| 3029c9a | Berke Toptas | 23 January 2018, 15:07:19 UTC | Readme files are updated | 23 January 2018, 15:07:19 UTC |
| 8696831 | Berke Toptas | 23 January 2018, 14:53:35 UTC | Version is updated to 1.0 (Tool is published in SBG Github) | 23 January 2018, 14:53:35 UTC |
| 31b4bb9 | Berke Toptas | 22 January 2018, 22:45:56 UTC | Version updated to 0.7.7 changelog is updated | 22 January 2018, 22:45:56 UTC |
| 142c71d | Berke Toptas | 22 January 2018, 22:42:18 UTC | ref overlap mode is set as a default mode trim endings first mode is set as default and only mode for trio comparison | 22 January 2018, 22:42:18 UTC |
| 5b4cc6e | Berke Toptas | 19 January 2018, 22:04:06 UTC | Variant categories ordering in detailed result logs are changed : determination order becomes child > father > mother (previously mother > father > child) | 19 January 2018, 22:04:06 UTC |
| 4a9e940 | Berke Toptas | 16 January 2018, 20:23:47 UTC | readme is updated | 16 January 2018, 20:23:47 UTC |
| fbb8898 | Berke Toptas | 16 January 2018, 20:14:24 UTC | FASTA parser destructor is corrected | 16 January 2018, 20:14:24 UTC |
| f2da342 | Berke Toptas | 16 January 2018, 17:02:51 UTC | new parameter is added to output selected INFO tags | 16 January 2018, 17:02:51 UTC |
| 4416011 | Berke Toptas | 16 January 2018, 17:02:23 UTC | VBT version is updated to 0.7.6 - changelog is updated | 16 January 2018, 17:02:23 UTC |
| fdddc1a | Berke Toptas | 16 January 2018, 16:55:16 UTC | -quality column is added to the output -INFO columns (selected by command line arg parameter) are added to the input | 16 January 2018, 16:55:16 UTC |
| f0ec07b | Berke Toptas | 09 January 2018, 14:46:42 UTC | Manuscript folder is removed | 09 January 2018, 14:46:42 UTC |
| c96b752 | Berke Toptas | 28 December 2017, 18:45:45 UTC | License text is added | 28 December 2017, 18:45:45 UTC |
| 0836d9b | Berke Toptas | 27 December 2017, 20:36:30 UTC | extra space is added to the beginning of VBT tool header print | 27 December 2017, 20:36:30 UTC |
| 4bf0e08 | Berke Toptas | 27 December 2017, 20:36:08 UTC | sample execution command is corrected | 27 December 2017, 20:36:08 UTC |
| 2fadade | Berke Toptas | 27 December 2017, 17:05:20 UTC | changelog of v 0.7.5 is added | 27 December 2017, 17:05:20 UTC |
| 689626c | Berke Toptas | 27 December 2017, 16:52:23 UTC | spacing after license file is corrected | 27 December 2017, 16:52:23 UTC |
| f9da18b | Berke Toptas | 27 December 2017, 16:48:49 UTC | GPL License is added to file headers | 27 December 2017, 16:48:49 UTC |
| 8410984 | Berke Toptas | 26 December 2017, 23:26:24 UTC | Version is updated to 0.7.5 | 26 December 2017, 23:26:24 UTC |
| 8a580f8 | Berke Toptas | 26 December 2017, 23:25:43 UTC | MergeFunc() is refactored : sub tasks are moved to helper functions | 26 December 2017, 23:25:43 UTC |
| 9446a09 | Berke Toptas | 26 December 2017, 23:24:16 UTC | a cutoff is added in SetChromosomeIdTuples() | 26 December 2017, 23:24:16 UTC |
| 4446455 | Berke Toptas | 26 December 2017, 21:20:15 UTC | Refactoring : duplicate code segments are refactored | 26 December 2017, 21:20:15 UTC |
| 55e0bea | Berke Toptas | 26 December 2017, 21:19:22 UTC | Refactoring : duplicate code segments are refactored | 26 December 2017, 21:19:22 UTC |
| e17055d | Berke Toptas | 26 December 2017, 16:55:54 UTC | Refactoring : Duplicate code segments are refactored | 26 December 2017, 16:55:54 UTC |
| 2d15633 | Berke Toptas | 26 December 2017, 16:53:07 UTC | Refactoring | 26 December 2017, 16:53:07 UTC |
| e80d25c | Berke Toptas | 26 December 2017, 16:52:39 UTC | SetThreadsCustom function signature is removed | 26 December 2017, 16:52:39 UTC |
| 96412e8 | Berke Toptas | 26 December 2017, 16:51:58 UTC | redundant else statements are removed | 26 December 2017, 16:51:58 UTC |
| 56a9a67 | Berke Toptas | 21 December 2017, 16:33:53 UTC | Refactoring: FindOptimalTrimmings() method moved to BaseVariantProvider | 21 December 2017, 16:33:53 UTC |
| 53d89e6 | Berke Toptas | 21 December 2017, 15:43:37 UTC | Variant ID from vcf file is read | 21 December 2017, 15:43:37 UTC |
| 1cabd42 | Berke Toptas | 19 December 2017, 14:24:00 UTC | closevcf() - freed parameters are set to NULL | 19 December 2017, 14:24:00 UTC |
| 237e2de | Berke Toptas | 19 December 2017, 14:21:27 UTC | SContig clean() method is modified | 19 December 2017, 14:21:27 UTC |
| 03c463a | Berke Toptas | 19 December 2017, 14:15:50 UTC | SetVariantStatus functions are removed | 19 December 2017, 14:15:50 UTC |
| 1d0befc | Berke Toptas | 12 December 2017, 20:14:07 UTC | changelog is updated for VBT v0.7.4 | 12 December 2017, 20:14:07 UTC |
| 5cf6c92 | Berke Toptas | 12 December 2017, 19:53:43 UTC | version is moved to 0.7.4 | 12 December 2017, 19:53:43 UTC |
| b038875 | Berke Toptas | 12 December 2017, 19:52:22 UTC | Additional error reporting is added to addRecord() function | 12 December 2017, 19:52:22 UTC |
| b77cb9f | Berke Toptas | 12 December 2017, 19:51:47 UTC | Ga4gh mode, empty samples are added to the record when there is no merge | 12 December 2017, 19:51:47 UTC |
| 55f6a97 | Berke Toptas | 12 December 2017, 19:50:25 UTC | Complex skipped variant assign is corrected (now marking variants after the last included variant) | 12 December 2017, 19:50:25 UTC |
| a8d1ba5 | Berke Toptas | 11 December 2017, 22:41:41 UTC | Third-party licenses file is added | 11 December 2017, 22:41:41 UTC |
| dcd5772 | Berke Toptas | 11 December 2017, 22:39:52 UTC | licenses folder is removed | 11 December 2017, 22:39:52 UTC |
| 29fb89d | Berke Toptas | 11 December 2017, 20:16:11 UTC | Docker file is added as an alternative build | 11 December 2017, 20:16:11 UTC |
| 347f56c | Berke Toptas | 11 December 2017, 19:28:23 UTC | Xcode project file is removed | 11 December 2017, 19:28:23 UTC |
| 1ed50c5 | Berke Toptas | 11 December 2017, 17:03:24 UTC | vbt executive is added to gitignore | 11 December 2017, 17:03:24 UTC |
| cef0b60 | Berke Toptas | 11 December 2017, 17:01:45 UTC | .gitignore is added to remove xcode.proj and DS_Store | 11 December 2017, 17:01:45 UTC |
| 6b104d8 | Berke Toptas | 11 December 2017, 16:56:35 UTC | .DS_Store files are removed from git | 11 December 2017, 16:56:35 UTC |
| 0550014 | Berke Toptas | 11 December 2017, 16:53:28 UTC | new line is added between nocall mode definitions | 11 December 2017, 16:53:28 UTC |
| b1bfc52 | Berke Toptas | 11 December 2017, 16:48:50 UTC | Licenses are added for RTG and HTSLIB dependencies | 11 December 2017, 16:48:50 UTC |
| ec2b650 | Berke Toptas | 11 December 2017, 16:29:39 UTC | Changelog file is added | 11 December 2017, 16:29:39 UTC |
| 4b3cb0f | Berke Toptas | 11 December 2017, 16:15:15 UTC | bcf word changed with vcf.gz | 11 December 2017, 16:15:15 UTC |
| 94d0fb2 | Berke Toptas | 11 December 2017, 16:02:58 UTC | version is updated to 0.7.3 | 11 December 2017, 16:02:58 UTC |
| 72b42ac | Berke Toptas | 11 December 2017, 16:01:29 UTC | Readme is updated. Example test data is added | 11 December 2017, 16:01:29 UTC |
| 2106622 | Berke Toptas | 11 December 2017, 15:45:24 UTC | Error message added when contig is not available in FASTA file | 11 December 2017, 15:45:24 UTC |
| 9cdcfee | Berke Toptas | 11 December 2017, 14:54:09 UTC | Ga4gh mode GetSkippedComplexVariants() function is corrected | 11 December 2017, 14:54:09 UTC |
| 2cb61ba | Berke Toptas | 08 December 2017, 19:52:12 UTC | Readme modified (graph comparison is removed) | 08 December 2017, 19:52:12 UTC |
| 9617d9f | Berke Toptas | 08 December 2017, 19:44:48 UTC | readme modified | 08 December 2017, 19:44:48 UTC |
| fdb13ad | Berke Toptas | 08 December 2017, 19:41:53 UTC | graph comparison is removed from makefile | 08 December 2017, 19:41:53 UTC |
| b9d02ac | Berke Toptas | 08 December 2017, 19:36:20 UTC | GraphComparison is removed from repository | 08 December 2017, 19:36:20 UTC |
| 9bf3b25 | Berke Toptas | 08 December 2017, 19:17:41 UTC | Graph Comparison is removed from project main function header is modified | 08 December 2017, 19:17:41 UTC |
| 5d71d27 | Berke Toptas | 08 December 2017, 19:04:16 UTC | FileHeaders are updated | 08 December 2017, 19:04:16 UTC |
| 0194915 | Berke Toptas | 08 December 2017, 16:13:53 UTC | extra space removed | 08 December 2017, 16:13:53 UTC |
| 12782e6 | Berke Toptas | 08 December 2017, 16:13:25 UTC | extra space removed | 08 December 2017, 16:13:25 UTC |
| 7cf02b3 | Berke Toptas | 08 December 2017, 14:36:37 UTC | redundant m_aContigList parameter is removed Variant provide destructor updated | 08 December 2017, 14:36:37 UTC |
| b7c20ad | Berke Toptas | 07 December 2017, 23:35:40 UTC | make file updated to compile CBaseVariantProvider | 07 December 2017, 23:35:40 UTC |
| 44ac017 | Berke Toptas | 07 December 2017, 23:06:22 UTC | -ga4gh output is sorted -ComplexSkipped variants are added to the non assessed variant list | 07 December 2017, 23:06:22 UTC |
| b98a0fe | Berke Toptas | 07 December 2017, 23:05:24 UTC | GetSkippedComplexVariants() function is added GetNonAssessedVariants() return type is modified | 07 December 2017, 23:05:24 UTC |
| 527bb90 | Berke Toptas | 07 December 2017, 23:04:30 UTC | not assessed variant input time converted from const ref to const pointer | 07 December 2017, 23:04:30 UTC |
