https://github.com/mrc-ide/human_tsol_FoI_modelling

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Revision Author Date Message Commit Date
b3eb4c0 updated readme - data availability 09 February 2022, 19:33:21 UTC
6ce9a74 new methods figure for readme file 07 February 2022, 21:01:28 UTC
baa7720 hyperlink in readme 13 January 2022, 17:08:18 UTC
86aae63 update code guide section in Readme file 13 January 2022, 17:02:54 UTC
2d25498 updated ReadMe 12 January 2022, 18:48:32 UTC
013a031 updated readme file 07 January 2022, 18:23:38 UTC
3af2ce8 Update README.md 06 January 2022, 11:17:44 UTC
a3dec33 Update README.md 06 January 2022, 11:17:08 UTC
d6b571a predicted prevaelnce function for reversible model fits to multiple data & fixed bugs with other predicted prev functions 05 January 2022, 00:25:01 UTC
e7f9477 processing (post-MCMC) functions for reversible model fitting to multiple datasets 04 January 2022, 19:41:43 UTC
e45e955 processing MCMC functions (simple model fitted to multiple dataset) and producing prevalence curve functions 04 January 2022, 17:49:04 UTC
54cfe1f functions to run reversible model fit to multiple datasets (need to check outputs) 03 January 2022, 07:36:20 UTC
0f2b4d7 functions to run MCMC for simple model fitted to multiple datasets (up to plotting chains/histogram - not processed 03 January 2022, 06:34:19 UTC
c48c7b7 check 03 January 2022, 05:05:10 UTC
ba5ca1e functions to run MCMC for reversible model (single dataset) inclunding prior, likelihood, posterior, proposal and MCMC 31 December 2021, 02:55:05 UTC
92be139 modify function to plot predicted prevalence and different y lim scales (zooming in) 24 December 2021, 23:22:43 UTC
ac8aff3 removed ref to pig (pos_pigs and n_pigs in dataset and likelihood 19 December 2021, 18:16:22 UTC
77ca1c6 for simple model; functions for parameter median/credible intervals/posterior plot, loglik plots, calculaing model fits (DIC), calculate predicted prevalence curves/uncertainty band + plot 19 December 2021, 18:03:18 UTC
2810062 age-prevalence plot function added 18 December 2021, 16:14:54 UTC
889f4a6 debug so functions able to call MCMC successfully & plot/process chains (up to sub-sampling) 17 December 2021, 17:01:58 UTC
333ed09 adding function to optimise diagnostic priors (alpha and beta shape pars for beta distributions), and test data 16 December 2021, 20:03:50 UTC
4c2d6f4 master script and sub-script function for MCMC (simple FoI to single dataset) up to processing 15 December 2021, 23:24:55 UTC
f1ea3a4 first commit 15 December 2021, 22:38:34 UTC
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