https://github.com/blab/mumps-wa-phylodynamics
Revision b496a25ab4343c427eafeee1574382dd99c2f7f9 authored by Louise H Moncla on 12 October 2020, 23:33:18 UTC, committed by Louise H Moncla on 12 October 2020, 23:33:18 UTC
1 parent 6957b0b
Tip revision: b496a25ab4343c427eafeee1574382dd99c2f7f9 authored by Louise H Moncla on 12 October 2020, 23:33:18 UTC
adding in more files for structured coalescent analyses
adding in more files for structured coalescent analyses
Tip revision: b496a25
full-North-America-metadata.tsv
strain virus accession date region country division city db segment authors url title journal paper_url MuV_genotype
Washington.USA/2017381/7.17/3/G mumps Washington_outbreak_106 2017-02-14 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/24.16/4/G mumps BCCDC38 2016-06-15 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/25.17/3/G mumps MG986421 2017-06-21 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986421 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/09.17/3/G mumps Ontario_outbreak_26 2017-02-24 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Massachusetts.USA/12.16/1/G mumps MF965287 2016-03-23 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965287 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017147/5.17/G mumps Washington_outbreak_27 2017-01-30 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017304/15.17/2/G mumps Washington_outbreak_20 2017-04-13 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/13.17/G mumps MG986396 2017-03-26 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986396 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017367/4.17/7/G mumps Washington_outbreak_56 2017-02-03 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/19.16/10/G mumps MF965261 2016-05-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965261 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Manitoba.CAN/47.16/4/G mumps BCCDC24 2016-10-25 North America Canada Manitoba Manitoba bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/25.17/6/G mumps MG986404 2017-06-21 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986404 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Montana.USA/11.16/G mumps MG986420 2016-03-15 North America USA Montana Montana genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986420 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/24.16/5/G mumps BCCDC64 2016-06-14 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/8.16/3/G mumps MF965254 2016-02-25 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965254 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Davangere.IND/01.14/C mumps KX953297 2014-02-02 South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/KX953297 Complete Genome Sequence of Mumps Virus Isolated from Karnataka State, India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ C
Massachusetts.USA/10.16/1/G mumps MF965266 2016-03-07 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965266 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017279/12.17/5/G mumps Washington_outbreak_31 2017-03-24 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/19.16/5/G mumps BCCDC32 2016-05-10 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/17.16/10/G mumps MF965276 2016-05-01 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965276 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/14.16/2/G mumps MF965239 2016-04-08 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965239 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017371/16.17/3/G mumps Washington_outbreak_60 2017-04-21 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Indiana.USA/49.16/G mumps MG986440 2016-12-12 North America USA Indiana Indiana genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986440 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017335/21.17/G mumps Washington_outbreak_66 2017-05-22 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Iowa.USA/06/G mumps JX287385 2006-XX-XX North America USA Iowa Iowa genbank genome Kirkness et al https://www.ncbi.nlm.nih.gov/nuccore/JX287385 Direct Submission Submitted (12-JUN-2012) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/12.17/4/G mumps Ontario_outbreak_15 2017-03-22 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Massachusetts.USA/18.16/3/G mumps MF965249 2016-05-05 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965249 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/40.09/1/G mumps KY680538 2009-09-28 North America Canada Ontario Ontario genbank genome Eshaghi et al https://www.ncbi.nlm.nih.gov/nuccore/KY680538 Mumps Outbreak in Ontario, Canada 2009-2010 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/24.16/1/G mumps BCCDC69 2016-06-13 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/22.17/5/G mumps MG986427 2017-05-31 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986427 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/24.16/7/G mumps BCCDC56 2016-06-15 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Ohio.USA/13.14/10/G mumps MG986451 2014-03-30 North America USA Ohio Ohio genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986451 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017013/48.16/3/G mumps Washington_outbreak_1 2016-12-07 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/10.16/13/G mumps MF965218 2016-03-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965218 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017132/3.17/3/G mumps Washington_outbreak_25 2017-01-20 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/11.16/1/G mumps MF965215 2016-03-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965215 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Springdale_745/2016/G mumps KY996511 2016-XX-XX North America USA Arkansas Arkansas genbank genome Wongsurawat et al https://www.ncbi.nlm.nih.gov/nuccore/KY996511 Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 outbreak in Arkansas, USA Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ge9.DEU/0.77/D mumps KF878076 1977-XX-XX Europe Germany Germany Germany genbank genome Jin et al https://www.ncbi.nlm.nih.gov/nuccore/KF878076 Genomic diversity of mumps virus and global distribution of the 12 genotypes Rev. Med. Virol. (2014) In press https://www.ncbi.nlm.nih.gov/pubmed/25424978 D
Texas.USA/27.17/G mumps MG986380 2017-07-03 North America USA Texas Texas genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986380 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017269/12.17/2/G mumps Washington_outbreak_30 2017-03-22 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017331/19.17/2/G mumps Washington_outbreak_49 2017-05-12 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Dadra&NagarHaveli.IND/42.16/2/G mumps MG460606 ? South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/MG460606 Mumps outbreak in a tribal population from the Union Territory of Dadra and Nagar Haveli, India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Missouri.USA/19.17/G mumps Missouri_sample_14 2017-05-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/10.17/G mumps MG986424 2017-03-06 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986424 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/44.16/1/G mumps MF965232 2016-10-31 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965232 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/19.16/4/G mumps MF965304 2016-05-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965304 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
S79-vaccine mumps MH426702 ? China China China China genbank genome Wang et al https://www.ncbi.nlm.nih.gov/nuccore/MH426702 Rescue of a Chinese mumps virus vaccine strain S79 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
BritishColumbia.CAN/8.17/3/G mumps BCCDC35 2017-02-22 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/21.17/G mumps MG986445 2017-05-26 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986445 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Shandong.CHN/4.05/F mumps KF042304 2005-01-29 China China Shandong Shandong genbank genome Cui et al https://www.ncbi.nlm.nih.gov/nuccore/KF042304 [Genetic analysis of a genotype F mumps virus based on its complete genome sequence] Bing Du Xue Bao 29 (6), 602-607 (2013) https://www.ncbi.nlm.nih.gov/pubmed/24520765 F
Washington.USA/2017156/4.17/6/G mumps Washington_outbreak_45 2017-01-31 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/15.17/G mumps Wisconsin_sample_4 2017-04-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/17.16/G mumps BCCDC10 2016-04-29 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Osmanabad.IND/10.12/17/C mumps KF843894 2012-03-11 South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/KF843894 Complete genome sequence of Mumps wild type strains isolated from India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ C
Washington.USA/2017030/50.16/3/G mumps Washington_outbreak_61 2016-12-12 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/14.16/1/G mumps MF965305 2016-04-08 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965305 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/46.16/5/G mumps MF965207 2016-11-17 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965207 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Manitoba.CAN/44.16/15/G mumps BCCDC23 2016-11-02 North America Canada Manitoba Manitoba bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/13.16/1/G mumps MF965274 2016-03-31 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965274 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
London.GBR/3.02-Uncl mumps KF878082 2002-01-22 Europe United Kingdom England London genbank genome Jin et al https://www.ncbi.nlm.nih.gov/nuccore/KF878082 Genomic diversity of mumps virus and global distribution of the 12 genotypes Rev. Med. Virol. (2014) In press https://www.ncbi.nlm.nih.gov/pubmed/25424978 ?
Fukuoka.JPN/41.00/L mumps KF878081 2000-10-14 Japan Korea Japan Fukuoka Fukuoka genbank genome Jin et al https://www.ncbi.nlm.nih.gov/nuccore/KF878081 Genomic diversity of mumps virus and global distribution of the 12 genotypes Rev. Med. Virol. (2014) In press https://www.ncbi.nlm.nih.gov/pubmed/25424978 L
Du/CRO05 mumps EU370207 2005-XX-XX Europe Croatia Croatia Croatia genbank genome Santak et al https://www.ncbi.nlm.nih.gov/nuccore/EU370207 Mumps virus isolate in Croatia in 2005 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/17.16/7/G mumps MF965280 2016-04-27 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965280 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017395/18.17/2/G mumps Washington_outbreak_92 2017-05-04 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Jeryl_Lynn mumps AF345290 ? China China China China genbank genome Amexis et al https://www.ncbi.nlm.nih.gov/nuccore/AF345290 Sequence diversity of Jeryl Lynn strain of mumps virus: quantitative mutant analysis for vaccine quality control Virology 300 (2), 171-179 (2002) https://www.ncbi.nlm.nih.gov/pubmed/12350348 ?
Ontario.CAN/50.09/3/G mumps KY680540 2009-12-11 North America Canada Ontario Ontario genbank genome Eshaghi et al https://www.ncbi.nlm.nih.gov/nuccore/KY680540 Mumps Outbreak in Ontario, Canada 2009-2010 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017392/14.17/2/G mumps Washington_outbreak_89 2017-04-06 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017311/16.17/G mumps Washington_outbreak_32 2017-04-19 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Missouri.USA/46.16/G mumps Missouri_sample_5 2016-11-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/5.17/G mumps MG986414 2017-01-30 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986414 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/22.16/1/G mumps MF965226 2016-06-03 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965226 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/29.16/4/G mumps BCCDC103 2016-07-24 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
BritishColumbia.CAN/30.16/3/G mumps BCCDC8 2016-07-27 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Pennsylvania.USA/51.14/G mumps MG986465 2014-12-16 North America USA Pennsylvania Pennsylvania genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986465 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017093/2.17/6/G mumps Washington_outbreak_63 2017-01-13 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/13.16/3/G mumps MF965292 2016-03-31 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965292 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Enders mumps GU980052 ? ? ? ? ? genbank genome Young et al https://www.ncbi.nlm.nih.gov/nuccore/GU980052 Mumps virus Enders strain is sensitive to interferon (IFN) despite encoding a functional IFN antagonist J. Gen. Virol. 90 (PT 11), 2731-2738 (2009) https://www.ncbi.nlm.nih.gov/pubmed/19625458 ?
Washington.USA/2017179/6.17/3/G mumps Washington_outbreak_13 2017-02-13 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
NorthDakota.USA/9.17/G mumps MG986411 2017-02-27 North America USA North Dakota North Dakota genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986411 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017232/8.17/5/G mumps Washington_outbreak_19 2017-02-28 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/27.16/3/G mumps BCCDC57 2016-07-07 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/18.16/1/G mumps MF965265 2016-05-04 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965265 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/8.17/G mumps MG986388 2017-02-19 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986388 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/18.16/4/G mumps MF965210 2016-05-08 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965210 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/23.17/G mumps MG986407 2017-06-05 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986407 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Arkansas.USA/45.16/G mumps MK585576 2016-10-30 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585576 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/34.16/3/G mumps BCCDC106 2016-08-28 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Washington.USA/2017151/5.17/2/G mumps Washington_outbreak_69 2017-02-01 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Georgia.USA/2.17/G mumps MG986466 2017-01-12 North America USA Georgia Georgia genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986466 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Urabe_AM-9-B mumps AB000387 ? ? ? ? ? genbank genome Mori et al https://www.ncbi.nlm.nih.gov/nuccore/AB000387 Complete Nucleotide Sequence of the Mumps Virus Urabe Vaccine Strain Genomic cDNA Rinsho To Uirusu 23, 341-352 (1995) https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/47.16/1/G mumps MF965307 2016-11-26 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965307 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/23.16/1/G mumps BCCDC73 2016-06-06 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Miyahara mumps AB040874 ? ? ? ? ? genbank genome Okazaki et al https://www.ncbi.nlm.nih.gov/nuccore/AB040874 Molecular cloning and sequence analysis of the mumps virus gene encoding the L protein and the trailer sequence Virology 188 (2), 926-930 (1992) https://www.ncbi.nlm.nih.gov/pubmed/1585659 ?
BritishColumbia.CAN/8.17/5/G mumps BCCDC61 2017-02-24 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Kushinagar.IND/36.13/C mumps KM385447 2013-09-07 South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/KM385447 Complete genome sequence of Mumps wild type strains isolated from India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ C
BritishColumbia.CAN/27.16/?/? mumps BCCDC65 2016-07-07 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? ?
BritishColumbia.CAN/16.16/4/G mumps BCCDC25 2016-04-21 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/12.16/5/G mumps MF965290 2016-03-22 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965290 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
9218/Zg98 mumps EU370206 1998-XX-XX Europe Croatia Croatia Croatia genbank genome Santak et al https://www.ncbi.nlm.nih.gov/nuccore/EU370206 Mumps virus isolate in Croatia in 1998 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Missouri.USA/41.16/G mumps Missouri_sample_4 2016-10-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
NewYork.USA/10.14/2/G mumps Broad_sequence_52 2014-03-03 North America USA New York New York broad genome Wohl et al ? Unpublished ? ? G
Washington.USA/2017277/12.17/3/G mumps Washington_outbreak_74 2017-03-24 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ontario.CAN/09.17/9/G mumps Ontario_outbreak_6 2017-02-28 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
87_1005 mumps AF314562 ? ? ? ? ? genbank genome Amexis et al https://www.ncbi.nlm.nih.gov/nuccore/AF314562 Correlation of genetic variability with safety of mumps vaccine Urabe AM9 strain Virology 287 (1), 234-241 (2001) https://www.ncbi.nlm.nih.gov/pubmed/11504558 ?
Louisiana.USA/29.17/G mumps MG986394 2017-07-21 North America USA Louisiana Louisiana genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986394 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/24.17/3/G mumps MG986464 2017-06-17 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986464 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Pune.Ind/50.08/C mumps KF843893 2008-12-30 South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/KF843893 Complete genome sequence of Mumps wild type strains isolated from India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ C
Massachusetts.USA/8.16/6/G mumps MF965235 2016-02-27 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965235 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017379/5.17/11/G mumps Washington_outbreak_104 2017-02-08 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/16.16/3/G mumps MF965250 2016-04-19 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965250 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Missouri.USA/2.17/G mumps Missouri_sample_8 2017-01-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Missouri.USA/24.17/G mumps Missouri_sample_16 2017-06-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/42.16/1/G mumps MF965301 2016-10-21 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965301 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/25.16/3/G mumps BCCDC102 2016-06-20 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/15.16/2/G mumps MF965228 2016-04-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965228 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017402/16.17/4/G mumps Washington_outbreak_98 2017-04-17 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017071/1.17/6/G mumps Washington_outbreak_8 2017-01-05 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/45.16/5/G mumps MF965300 2016-11-13 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965300 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017401/28.17/G mumps Washington_outbreak_97 2017-07-12 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017268/12.17/G mumps Washington_outbreak_53 2017-03-22 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/13.16/2/G mumps MF965267 2016-03-30 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965267 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
SBL-1 mumps AB560663 ? ? ? ? ? genbank genome Fujieda et al https://www.ncbi.nlm.nih.gov/nuccore/AB560663 Phenotype of mumps virus deficient of the SH gene Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Ontario.CAN/08.17/3/G mumps Ontario_outbreak_11 2017-02-24 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Washington.USA/2017153/5.17/3/G mumps Washington_outbreak_9 2017-01-31 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/10.17/2/G mumps MG986438 2017-03-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986438 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017347/22.17/G mumps Washington_outbreak_71 2017-05-30 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Kansas.USA/9.17/2/G mumps MG986403 2017-02-28 North America USA Kansas Kansas genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986403 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/30.16/2/G mumps BCCDC4 2016-07-31 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Kansas.USA/15.17/G mumps MG986385 2017-04-10 North America USA Kansas Kansas genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986385 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Illinois.USA/26.15/2/G mumps MG986460 2015-06-24 North America USA Illinois Illinois genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986460 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/19.16/2/G mumps MF965309 2016-05-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965309 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/24.16/G mumps Wisconsin_sample_19 2016-06-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017080/1.17/8/G mumps Washington_outbreak_109 2017-01-10 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/19.16/2/G mumps BCCDC82 2016-05-10 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
NewYork.USA/51.14/G mumps Broad_sequence_54 2014-12-16 North America USA New York New York broad genome Wohl et al ? Unpublished ? ? G
Zhejiang.CHN/26.05 mumps KF170916 2005-06-28 China China Zhejiang Zhejiang genbank genome He et al https://www.ncbi.nlm.nih.gov/nuccore/KF170916 Mumps epidemiology and molecular charicterisation of mumps virus circulating in Zhejiang province, China during the period of 2005-2010 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Washington.USA/2017025/50.16/2/G mumps Washington_outbreak_3 2016-12-12 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ohio.USA/2.18/G mumps Ohio_sample_1 2018-01-XX North America USA Ohio Ohio fh genome Moncla et al ? Unpublished ? ? G
Kansas.USA/13.17/2/G mumps MG986452 2017-03-29 North America USA Kansas Kansas genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986452 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017174/5.17/6/G mumps Washington_outbreak_10 2017-02-04 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Missouri.USA/32.16/G mumps Missouri_sample_1 2016-08-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Ohio.USA/13.14/6/G mumps MG986455 2014-03-26 North America USA Ohio Ohio genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986455 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Bedford.GBR/0.89/H mumps KF878077 1989-XX-XX Europe United Kingdom England Bedford genbank genome Jin et al https://www.ncbi.nlm.nih.gov/nuccore/KF878077 Genomic diversity of mumps virus and global distribution of the 12 genotypes Rev. Med. Virol. (2014) In press https://www.ncbi.nlm.nih.gov/pubmed/25424978 H
Arkansas.USA/12.17/G mumps MK585570 2017-03-21 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585570 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017336/20.17/G mumps Washington_outbreak_77 2017-05-21 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/50.16/G mumps Wisconsin_sample_21 2016-12-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/16.16/7/G mumps MF965259 2016-04-21 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965259 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/10.16/8/G mumps MF965310 2016-03-12 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965310 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/46.16/1/G mumps MF965282 2016-11-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965282 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/29.14/G mumps Wisconsin_sample_14 2014-07-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/24.17/2/G mumps MG986448 2017-06-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986448 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/50.09/1/G mumps KY680539 2009-12-13 North America Canada Ontario Ontario genbank genome Eshaghi et al https://www.ncbi.nlm.nih.gov/nuccore/KY680539 Mumps Outbreak in Ontario, Canada 2009-2010 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/8.17/2/G mumps BCCDC98 2017-02-23 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
BritishColumbia.CAN/21.16/6/G mumps BCCDC34 2016-05-25 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/25.17/7/G mumps MG986447 2017-06-23 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986447 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
SP mumps DQ649478 2007-07-15 China China China China genbank genome Ma et al https://www.ncbi.nlm.nih.gov/nuccore/DQ649478 Sequence analysis of the SH gene and its flanking region of mumps virus isolated strain (SP strain) Microbes Infect. (2006) In press https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/17.16/8/G mumps MF965224 2016-04-26 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965224 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/04.17/1/G mumps Ontario_outbreak_20 2017-01-23 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Massachusetts.USA/11.17/G mumps MG986383 2017-03-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986383 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/08.17/1/G mumps Ontario_outbreak_10 2017-02-21 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Wisconsin.USA/16.14/G mumps Wisconsin_sample_1 2014-04-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/19.17/2/G mumps MG986412 2017-05-11 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986412 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/30.16/1/G mumps BCCDC16 2016-07-31 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
New_York.USA/01.10 mumps JX287389 2010-01-04 North America USA New York New York genbank genome Kirkness et al https://www.ncbi.nlm.nih.gov/nuccore/JX287389 Direct Submission Submitted (12-JUN-2012) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/ ?
Arkansas.USA/13.17/G mumps MK585574 2017-03-26 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585574 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
NorthDakota.USA/15.17/G mumps MG986381 2017-04-13 North America USA North Dakota North Dakota genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986381 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
unnamed mumps AF314559 ? ? ? ? ? genbank genome Amexis et al https://www.ncbi.nlm.nih.gov/nuccore/AF314559 Correlation of genetic variability with safety of mumps vaccine Urabe AM9 strain Virology 287 (1), 234-241 (2001) https://www.ncbi.nlm.nih.gov/pubmed/11504558 ?
Massachusetts.USA/16.16/5/G mumps MF965209 2016-04-20 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965209 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Arkansas.USA/46.16/G mumps MK585581 2016-11-10 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585581 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/51.15/G mumps Wisconsin_sample_28 2015-12-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017120/2.17/11/G mumps Washington_outbreak_23 2017-01-13 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/33.16/1/G mumps BCCDC87 2016-08-16 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Pune.IND/07.12/G mumps KF738114 2012-02-14 South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/KF738114 Complete genome sequence of mumps wild type strains isolated from India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Indiana.USA/1.17/G mumps MG986453 2017-01-06 North America USA Indiana Indiana genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986453 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/45.16/3/G mumps MF965221 2016-11-11 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965221 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017377/5.17/9/G mumps Washington_outbreak_103 2017-02-02 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017118/3.17/G mumps Washington_outbreak_64 2017-01-17 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/17.16/2/G mumps MF965316 2016-04-24 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965316 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/09.17/6/G mumps Ontario_outbreak_3 2017-02-27 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Ohio.USA/46.17/G mumps Ohio_sample_6 2017-11-XX North America USA Ohio Ohio fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/17.16/4/G mumps MF965247 2016-04-26 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965247 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/43.16/2/G mumps MF965283 2016-10-26 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965283 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/19.16/1/G mumps BCCDC70 2016-05-10 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Wisconsin.USA/20.14/2/G mumps Wisconsin_sample_12 2014-05-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017333/19.17/3/G mumps Washington_outbreak_76 2017-05-11 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/29.16/3/G mumps BCCDC105 2016-07-22 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/18.16/2/G mumps MF965238 2016-05-05 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965238 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/22.17/6/G mumps MG986467 2017-05-31 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986467 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/10.16/2/G mumps MF965225 2016-03-08 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965225 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/37.16/1/G mumps MF965284 2016-09-11 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965284 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017361/51.16/3/G mumps Washington_outbreak_37 2016-12-21 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Dg1062/Korea/98 mumps AY309060 1998-XX-XX Japan Korea South Korea South Korea South Korea genbank genome Lee et al https://www.ncbi.nlm.nih.gov/nuccore/AY309060 Complete nucleotide sequence of a mumps virus genotype I strain isolated in Korea Virus Genes 28 (2), 201-205 (2004) https://www.ncbi.nlm.nih.gov/pubmed/14976420 ?
Massachusetts.USA/17.16/11/G mumps MF965211 2016-04-30 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965211 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/11.07/2/G mumps Wisconsin_sample_10 2007-03-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Alabama.USA/15.17/G mumps Alabama_sample_3 2017-04-XX North America USA Alabama Alabama fh genome Moncla et al ? Unpublished ? ? G
Indiana.USA/48.16/G mumps MG986406 2016-11-28 North America USA Indiana Indiana genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986406 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/22.16/1/G mumps BCCDC54 2016-05-31 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/22.17/8/G mumps MG986392 2017-06-04 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986392 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017108/2.17/10/G mumps Washington_outbreak_22 2017-01-17 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
L3/Russia/Vector mumps AY508995 ? West Asia Russia Russia Russia genbank genome Neverov et al https://www.ncbi.nlm.nih.gov/nuccore/AY508995 Complete nucleotide sequence of L3 live mumps vaccine strain and its comparison with other vaccine and virulent strains sequences Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/12.16/2/G mumps MF965256 2016-03-24 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965256 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/27.16/4/G mumps BCCDC58 2016-07-06 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
31170186 mumps LC325484 2017-XX-XX Japan Korea Japan Japan Japan genbank genome Hasegawa et al https://www.ncbi.nlm.nih.gov/nuccore/LC325484 Detection of Mumps rubulavirus Tokyo, Japan Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
BritishColumbia.CAN/8.17/8/G mumps BCCDC62 2017-02-26 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/22.17/4/G mumps MG986399 2017-05-31 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986399 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
NewHampshire.USA/40.16/G mumps MG986463 2016-10-07 North America USA New Hampshire New Hampshire genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986463 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/09.17/4/G mumps Ontario_outbreak_1 2017-02-25 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Georgia.USA/13.17/G mumps MG986413 2017-03-27 North America USA Georgia Georgia genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986413 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/13.10/G mumps KY006858 2010-03-31 North America Canada Ontario Ontario genbank genome Eshaghi et al https://www.ncbi.nlm.nih.gov/nuccore/KY006858 A Review of Laboratory Testing During a Mumps Outbreak in Ontario, Canada Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Y213 mumps AB576764 ? ? ? ? ? genbank genome Saika et al https://www.ncbi.nlm.nih.gov/nuccore/AB576764 Development and biological properties of a new live attenuated mumps vaccine Comp. Immunol. Microbiol. Infect. Dis. 29 (2-3), 89-99 (2006) https://www.ncbi.nlm.nih.gov/pubmed/16647119 ?
Massachusetts.USA/37.15/1/G mumps MF965262 2015-09-15 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965262 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Missouri.USA/28.17/G mumps Missouri_sample_2 2017-07-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017397/20.17/4/G mumps Washington_outbreak_94 2017-05-24 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ontario.CAN/12.17/5/G mumps Ontario_outbreak_16 2017-03-25 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
NewYork.USA.USA/51.14/G mumps MG986410 2014-12-16 North America USA New York New York genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986410 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/33.16/3/G mumps BCCDC96 2016-08-19 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/46.16/4/G mumps MF965217 2016-11-15 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965217 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Michigan.USA/12.14/G mumps MG986450 2014-03-20 North America USA Michigan Michigan genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986450 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
RS-12 mumps JQ388690 ? West Asia Iran Iran Iran genbank genome Alirezaie et al https://www.ncbi.nlm.nih.gov/nuccore/JQ388690 Wild and attenuated vaccine RS-12 strains of mumps virus exhibit differences in amino acid sequences of their proteins Acta Virol. 58 (3), 287-291 (2014) https://www.ncbi.nlm.nih.gov/pubmed/25283866 ?
Arkansas.USA/50.16/G mumps MK585609 2016-12-10 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585609 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017393/15.17/3/G mumps Washington_outbreak_90 2017-04-18 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/20.16/1/G mumps BCCDC71 2016-05-22 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
MountIsa.AUS/10.17/G mumps MH638235 2017-XX-XX Oceania Australia Australia Australia genbank genome Huang et al https://www.ncbi.nlm.nih.gov/nuccore/MH638235 Illumina sequencing of clinical samples for virus detection in a public health laboratory: a feasibility study Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Urabe_AM-9-A mumps AB000386 ? ? ? ? ? genbank genome Mori et al https://www.ncbi.nlm.nih.gov/nuccore/AB000386 Complete Nucleotide Sequence of the Mumps Virus Urabe Vaccine Strain Genomic cDNA Rinsho To Uirusu 23, 341-352 (1995) https://www.ncbi.nlm.nih.gov/pubmed/ ?
Washington.USA/2017100/2.17/8/G mumps Washington_outbreak_50 2017-01-12 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Rockhampton.AUS/41.16/G mumps MH638234 2016-XX-XX Oceania Australia Australia Australia genbank genome Huang et al https://www.ncbi.nlm.nih.gov/nuccore/MH638234 Illumina sequencing of clinical samples for virus detection in a public health laboratory: a feasibility study Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/16.16/9/G mumps MF965251 2016-04-21 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965251 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017141/4.17/3/G mumps Washington_outbreak_44 2017-01-28 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Gabon/13/2/G mumps KM597072 2013-03-01 Africa Gabon Gabon Gabon genbank genome Maganga et al https://www.ncbi.nlm.nih.gov/nuccore/KM597072 Complete genome sequence of mumps virus genotype g from a vaccinated child in franceville, southeastern Gabon, in 2013 Genome Announc 2 (6) (2014) https://www.ncbi.nlm.nih.gov/pubmed/25428961 G
Washington.USA/2017075/2.17/G mumps Washington_outbreak_43 2017-01-11 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Mass.USA/4.10 mumps JX287388 2010-01-29 North America USA Massachusetts Massachusetts genbank genome Kirkness et al https://www.ncbi.nlm.nih.gov/nuccore/JX287388 Direct Submission Submitted (12-JUN-2012) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/13.16/4/G mumps MF965213 2016-04-01 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965213 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/41.06/2/G mumps Wisconsin_sample_25 2006-10-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/17.16/9/G mumps MF965289 2016-04-29 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965289 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/09.17/8/G mumps Ontario_outbreak_5 2017-02-28 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Springdale_730/2016/G mumps KY996510 2016-XX-XX North America USA Arkansas Arkansas genbank genome Wongsurawat et al https://www.ncbi.nlm.nih.gov/nuccore/KY996510 Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 outbreak in Arkansas, USA Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Drag94 mumps AY669145 ? West Asia Russia Russia Russia genbank genome Neverov et al https://www.ncbi.nlm.nih.gov/nuccore/AY669145 Characterization of Mumps viruses isolated in Novosibirsk (Western Siberia) during 1994-2003 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/46.16/6/G mumps MF965204 2016-11-20 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965204 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/24.17/4/G mumps MG986428 2017-06-19 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986428 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Dadra&NagarHaveli.IND/42.16/1/G mumps KY604739 2016-10-13 South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/KY604739 Mumps outbreak in a tribal population from the Union Territory of Dadra and Nagar Haveli, India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Osmanabad.IND/10.12/18/C mumps KF843895 2012-03-11 South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/KF843895 Complete genome sequence of Mumps wild type strains isolated from India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ C
BritishColumbia.CAN/36.16/G mumps BCCDC101 2016-09-07 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/20.16/1/G mumps MF965311 2016-05-18 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965311 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Arkansas.USA/41.16/G mumps MK585596 2016-10-03 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585596 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/14.17/2/G mumps MG986397 2017-04-10 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986397 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/11.16/2/G mumps MF965220 2016-03-15 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965220 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/10.16/7/G mumps MF965264 2016-03-10 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965264 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
NewPlymouth.NZL/30.17/G mumps MG765426 2017-07-24 Oceania New Zealand ? ? genbank genome Dilcher et al https://www.ncbi.nlm.nih.gov/nuccore/MG765426 Monitoring viral genetic variation as a tool to improve molecular diagnostics for Mumps virus J. Clin. Microbiol. (2018) In press https://www.ncbi.nlm.nih.gov/pubmed/30021826 G
Leeds.GBR/9.04/J mumps KF878079 2004-03-04 Europe United Kingdom England Leeds genbank genome Jin et al https://www.ncbi.nlm.nih.gov/nuccore/KF878079 Genomic diversity of mumps virus and global distribution of the 12 genotypes Rev. Med. Virol. (2014) In press https://www.ncbi.nlm.nih.gov/pubmed/25424978 J
Ohio.USA/12.14/9/G mumps MG986409 2014-03-21 North America USA Ohio Ohio genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986409 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017231/9.17/3/G mumps Washington_outbreak_18 2017-03-01 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ontario.CAN/12.17/3/G mumps Ontario_outbreak_14 2017-03-20 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Massachusetts.USA/19.16/9/G mumps MF965230 2016-05-13 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965230 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/24.16/2/G mumps BCCDC18 2016-06-13 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/12.17/G mumps MG986425 2017-03-24 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986425 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/06.17/2/G mumps Ontario_outbreak_22 2017-02-07 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Ontario.CAN/07.17/1/G mumps Ontario_outbreak_23 2017-02-15 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Ontario.CAN/09.17/10/G mumps Ontario_outbreak_7 2017-03-01 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Ontario.CAN/13.17/2/G mumps Ontario_outbreak_18 2017-03-31 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Washington.USA/2017362/9.17/4/G mumps Washington_outbreak_38 2017-03-06 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/10.16/5/G mumps MF965253 2016-03-10 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965253 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/21.16/2/G mumps MF965231 2016-05-26 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965231 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017359/30.17/G mumps Washington_outbreak_28 2017-07-25 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Zhejiang.CHN/16.08/2 mumps KF170918 2008-04-18 China China Zhejiang Zhejiang genbank genome He et al https://www.ncbi.nlm.nih.gov/nuccore/KF170918 Mumps epidemiology and molecular charicterisation of mumps virus circulating in Zhejiang province, China during the period of 2005-2010 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Arkansas.USA/5.17/G mumps MK585617 2017-02-02 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585617 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017058/52.16/G mumps Washington_outbreak_72 2016-12-30 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/19.16/7/G mumps MF965203 2016-05-10 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965203 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017396/19.17/4/G mumps Washington_outbreak_93 2017-05-11 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/28.16/3/G mumps BCCDC86 2016-07-12 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Missouri.USA/15.17/3/G mumps Missouri_sample_13 2017-04-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Illinois.USA/11.17/G mumps MG986454 2017-03-18 North America USA Illinois Illinois genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986454 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/08.17/2/G mumps Ontario_outbreak_24 2017-02-19 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Massachusetts.USA/16.16/10/G mumps MF965255 2016-04-22 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965255 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/37.09/G mumps KY006856 2009-09-13 North America Canada Ontario Ontario genbank genome Eshaghi et al https://www.ncbi.nlm.nih.gov/nuccore/KY006856 A Review of Laboratory Testing During a Mumps Outbreak in Ontario, Canada Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/9.16/2/G mumps MF965302 2016-03-06 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965302 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017391/14.17/G mumps Washington_outbreak_88 2017-04-06 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017366/3.17/5/G mumps Washington_outbreak_55 2017-01-18 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Missouri.USA/29.15/G mumps Missouri_sample_3 2015-07-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017376/5.17/8/G mumps Washington_outbreak_102 2017-01-31 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017315/16.17/2/G mumps Washington_outbreak_75 2017-04-23 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Biken mumps AF314561 ? ? ? ? ? genbank genome Amexis et al https://www.ncbi.nlm.nih.gov/nuccore/AF314561 Correlation of genetic variability with safety of mumps vaccine Urabe AM9 strain Virology 287 (1), 234-241 (2001) https://www.ncbi.nlm.nih.gov/pubmed/11504558 ?
BritishColumbia.CAN/22.16/2/G mumps BCCDC72 2016-05-31 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/19.16/8/G mumps MF965317 2016-05-11 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965317 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/7.17/G mumps MG986422 2017-02-13 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986422 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/12.17/2/G mumps Ontario_outbreak_13 2017-03-21 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
BritishColumbia.CAN/23.16/2/G mumps BCCDC80 2016-06-12 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Ohio.USA/7.17/G mumps Ohio_sample_4 2017-02-XX North America USA Ohio Ohio fh genome Moncla et al ? Unpublished ? ? G
Virginia.USA/51.14/G mumps MG986433 2014-12-19 North America USA Virginia Virginia genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986433 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
NorthCarolina.USA/11.17/G mumps NorthCarolina_sample_1 2017-03-XX North America USA North Carolina North Carolina fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/15.06/H mumps Wisconsin_sample_3 2006-04-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? H
Wisconsin.USA/19.16/G mumps Wisconsin_sample_20 2016-05-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/29.16/6/G mumps BCCDC40 2016-07-21 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Missouri.USA/7.17/G mumps Missouri_sample_9 2017-02-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/41.06/G mumps Wisconsin_sample_7 2006-10-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/8.16/5/G mumps MF965268 2016-02-25 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965268 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
RIT4385 mumps FJ211585 ? ? ? ? ? genbank genome Tillieux et al https://www.ncbi.nlm.nih.gov/nuccore/FJ211585 Comparative analysis of the complete nucleotide sequences of measles, mumps, and rubella strain genomes contained in Priorix-Tetra and ProQuad live attenuated combined vaccines Vaccine 27 (16), 2265-2273 (2009) https://www.ncbi.nlm.nih.gov/pubmed/19428841 ?
Washington.USA/2017389/12.17/8/G mumps Washington_outbreak_87 2017-03-27 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ontario.CAN/09.17/2/G mumps Ontario_outbreak_25 2017-02-23 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Massachusetts.USA/9.16/1/G mumps MF965227 2016-03-02 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965227 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017380/6.17/6/G mumps Washington_outbreak_105 2017-02-10 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ontario.CAN/09.17/5/C mumps Ontario_outbreak_2 2017-02-27 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? C
Washington.USA/2017064/52.16/2/G mumps Washington_outbreak_108 2016-12-31 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/16.16/4/G mumps MF965242 2016-04-19 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965242 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/24.16/3/G mumps BCCDC55 2016-06-14 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Washington.USA/2017073/1.17/7/G mumps Washington_outbreak_73 2017-01-11 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ohio.USA/19.16/G mumps Ohio_sample_2 2016-05-XX North America USA Ohio Ohio fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/46.15/G mumps Wisconsin_sample_17 2015-11-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/15.06/3/G mumps Wisconsin_sample_22 2006-04-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/13.17/2/G mumps MG986393 2017-03-28 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986393 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Arkansas.USA/49.16/G mumps MK585615 2016-11-29 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585615 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/11.16/G mumps BCCDC107 2016-03-14 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
NewJersey.USA/16.14/2/G mumps MG986442 2014-04-28 North America USA New Jersey New Jersey genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986442 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
SIPAR_02 mumps AF314558 ? ? ? ? ? genbank genome Amexis et al https://www.ncbi.nlm.nih.gov/nuccore/AF314558 Correlation of genetic variability with safety of mumps vaccine Urabe AM9 strain Virology 287 (1), 234-241 (2001) https://www.ncbi.nlm.nih.gov/pubmed/11504558 ?
Ontario.CAN/13.17/1/G mumps Ontario_outbreak_17 2017-03-30 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
BritishColumbia.CAN/14.11/2/G mumps BCCDC26 2011-04-03 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Illinois.USA/14.17/G mumps MG986423 2017-04-05 North America USA Illinois Illinois genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986423 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
MuVi-MNG09-024 mumps AB600843 2009-05-28 West Asia Mongolia Mongolia Mongolia genbank genome Kidokoro et al https://www.ncbi.nlm.nih.gov/nuccore/AB600843 Characterization of mumps viruses circulating in mongolia: identification of a novel cluster of genotype h J. Clin. Microbiol. 49 (5), 1917-1925 (2011) https://www.ncbi.nlm.nih.gov/pubmed/21411578 ?
Washington.USA/2017373/49.16/4/G mumps Washington_outbreak_99 2016-12-11 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/52.16/G mumps MG986382 2016-12-27 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986382 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/20.14/G mumps Wisconsin_sample_2 2014-05-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017193/6.17/5/G mumps Washington_outbreak_14 2017-02-08 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/10.16/11/G mumps MF965216 2016-03-11 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965216 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/12.16/3/G mumps MF965278 2016-03-25 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965278 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/19.16/3/G mumps MF965303 2016-05-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965303 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/8.16/2/G mumps MF965234 2016-02-24 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965234 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/10.16/14/G mumps MF965248 2016-03-15 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965248 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017358/29.17/G mumps Washington_outbreak_79 2017-07-26 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017178/6.17/2/G mumps Washington_outbreak_12 2017-02-08 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/10.16/12/G mumps MF965244 2016-03-12 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965244 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Alabama.USA/50.17/G mumps Alabama_sample_4 2017-12-XX North America USA Alabama Alabama fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/19.16/11/G mumps MF965223 2016-05-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965223 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/10.16/3/G mumps MF965298 2016-03-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965298 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/16.16/17/G mumps MF965263 2016-04-24 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965263 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Springdale_754/2016/G mumps KY996512 2016-XX-XX North America USA Arkansas Arkansas genbank genome Wongsurawat et al https://www.ncbi.nlm.nih.gov/nuccore/KY996512 Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 outbreak in Arkansas, USA Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Hoshino_vaccine mumps AB470486 ? ? ? ? ? genbank genome Ninomiya et al https://www.ncbi.nlm.nih.gov/nuccore/AB470486 Amino acid substitution at position 464 in the haemagglutinin-neuraminidase protein of a mumps virus Urabe strain enhanced the virus growth in neuroblastoma SH-SY5Y cells Vaccine 27 (44), 6160-6165 (2009) https://www.ncbi.nlm.nih.gov/pubmed/19712764 ?
BritishColumbia.CAN/28.16/4/G mumps BCCDC68 2016-07-13 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
New_York.USA/53.09/3 mumps JX287387 2010-01-07 North America USA New York New York genbank genome Kirkness et al https://www.ncbi.nlm.nih.gov/nuccore/JX287387 Direct Submission Submitted (12-JUN-2012) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/ ?
Arkansas.USA/52.16/G mumps MK585593 2016-12-19 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585593 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017069/1.17/5/G mumps Washington_outbreak_62 2017-01-08 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/22.16/2/G mumps MF965237 2016-06-03 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965237 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/16.16/1/G mumps MF965241 2016-04-19 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965241 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/42.15/G mumps Wisconsin_sample_15 2015-10-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/16.16/19/G mumps MF965269 2016-04-22 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965269 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017365/2.17/13/G mumps Washington_outbreak_54 2017-01-13 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/16.16/16/G mumps MF965206 2016-04-23 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965206 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ohio.USA/13.14/7/G mumps MG986446 2014-03-25 North America USA Ohio Ohio genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986446 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017374/1.17/10/G mumps Washington_outbreak_100 2017-01-03 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ontario.CAN/09.17/1/G mumps Ontario_outbreak_19 2017-02-28 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Pune.IND/00.86/G mumps KF738113 1986-XX-XX South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/KF738113 Complete genome sequence of mumps wild type strains isolated from India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017217/9.17/G mumps Washington_outbreak_16 2017-02-28 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ohio.USA/11.17/G mumps Ohio_sample_5 2017-03-XX North America USA Ohio Ohio fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/2.16/G mumps Wisconsin_sample_18 2016-01-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Ontario.CAN/09.17/7/G mumps Ontario_outbreak_4 2017-02-27 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Massachusetts.USA/19.16/5/G mumps MF965199 2016-05-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965199 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/16.16/2/G mumps MF965257 2016-04-19 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965257 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Alabama.USA/19.17/G mumps Alabama_sample_2 2017-05-XX North America USA Alabama Alabama fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/42.15/2/G mumps Wisconsin_sample_16 2015-10-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017399/23.17/2/G mumps Washington_outbreak_96 2017-06-12 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ontario.CAN/38.09/2/G mumps KY680537 2009-09-17 North America Canada Ontario Ontario genbank genome Eshaghi et al https://www.ncbi.nlm.nih.gov/nuccore/KY680537 Mumps Outbreak in Ontario, Canada 2009-2010 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Manitoba.CAN/43.16/11/G mumps BCCDC21 2016-10-26 North America Canada Manitoba Manitoba bccdc genome Gardy et al ? Unpublished ? ? G
Washington.USA/2017047/51.16/G mumps Washington_outbreak_42 2016-12-22 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Virginia.USA/10.12/H mumps KY969483 2012-03-11 North America USA Virginia Virginia genbank genome Elena et al https://www.ncbi.nlm.nih.gov/nuccore/KY969483 Direct Submission Submitted (20-APR-2017) Measles, Mumps, Rubella and Herpesvirus Laboratory Branch, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA https://www.ncbi.nlm.nih.gov/pubmed/ H
Massachusetts.USA/24.17/G mumps MG986443 2017-06-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986443 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/22.17/7/G mumps MG986405 2017-06-03 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986405 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Missouri.USA/15.17/G mumps Missouri_sample_11 2017-04-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/21.16/1/G mumps MF965260 2016-05-24 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965260 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Texas.USA/15.17/G mumps MG986391 2017-04-13 North America USA Texas Texas genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986391 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Missouri.USA/11.17/G mumps Missouri_sample_10 2017-03-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017341/20.17/3/G mumps Washington_outbreak_78 2017-05-22 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/16.16/6/G mumps MF965279 2016-04-20 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965279 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/26.16/5/G mumps BCCDC99 2016-06-30 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Washington.USA/2017144/4.17/4/G mumps Washington_outbreak_67 2017-01-30 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/14.17/G mumps MG986439 2017-04-02 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986439 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/10.16/4/G mumps MF965318 2016-03-10 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965318 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/24.17/5/K mumps MG986430 2017-06-16 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986430 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ K
Washington.USA/2017383/8.17/6/G mumps Washington_outbreak_81 2017-02-22 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/19.16/3/G mumps BCCDC83 2016-05-10 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/19.16/6/G mumps MF965315 2016-05-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965315 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Arkansas.USA/40.16/G mumps MK585583 2016-09-30 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585583 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
SP-A mumps FJ556896 2005-XX-XX China China China China genbank genome Ma et al https://www.ncbi.nlm.nih.gov/nuccore/FJ556896 Direct Submission Submitted (16-DEC-2008) Viral Immunology, Institute of Medical Biology, Chinese Academy of Medical Sciences, Peking Union Medical College, 379, Jiaoling Rd, Kunming, Yunnan 650118, China https://www.ncbi.nlm.nih.gov/pubmed/ ?
Washington.USA/2017229/9.17/2/G mumps Washington_outbreak_111 2017-03-01 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017023/50.16/G mumps Washington_outbreak_2 2016-12-13 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017382/7.17/4/G mumps Washington_outbreak_107 2017-02-19 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017321/17.17/3/G mumps Washington_outbreak_36 2017-04-29 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/9.16/4/G mumps MF965197 2016-03-08 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965197 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
31170170 mumps LC325483 2017-XX-XX Japan Korea Japan Japan Japan genbank genome Hasegawa et al https://www.ncbi.nlm.nih.gov/nuccore/LC325483 Detection of Mumps rubulavirus Tokyo, Japan Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Ontario.CAN/06.17/1/G mumps Ontario_outbreak_21 2017-02-06 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Washington.USA/2017387/11.17/5/G mumps Washington_outbreak_85 2017-03-18 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Arkansas.USA/51.16/G mumps MK585589 2016-12-16 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585589 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/27.16/7/G mumps BCCDC93 2016-07-09 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/14.16/3/G mumps MF965297 2016-04-12 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965297 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/22.17/2/G mumps MG986461 2017-05-30 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986461 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/11.16/6/G mumps MF965281 2016-03-22 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965281 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/17.16/1/G mumps MF965313 2016-04-25 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965313 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
L-Zagreb mumps AY685921 ? ? ? ? ? genbank genome Ivancic et al https://www.ncbi.nlm.nih.gov/nuccore/AY685921 Genetic characterization of a mumps virus isolate during passaging in the amniotic cavity of embryonated chicken eggs Virus Res. 99 (2), 121-129 (2004) https://www.ncbi.nlm.nih.gov/pubmed/14749177 ?
Washington.USA/2017369/7.17/2/G mumps Washington_outbreak_58 2017-02-22 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/22.17/3/G mumps MG986402 2017-05-30 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986402 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017398/23.17/G mumps Washington_outbreak_95 2017-06-11 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/33.16/1/G mumps MF965295 2016-08-19 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965295 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/11.16/5/G mumps MF965275 2016-03-20 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965275 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
88-1961 mumps AF467767 ? ? ? ? ? genbank genome Amexis et al https://www.ncbi.nlm.nih.gov/nuccore/AF467767 Identification of a new genotype H wild-type mumps virus strain and its molecular relatedness to other virulent and attenuated strains J. Med. Virol. 70 (2), 284-286 (2003) https://www.ncbi.nlm.nih.gov/pubmed/12696119 ?
NewHampshire.USA/8.16/1/G mumps MG986434 2016-02-25 North America USA New Hampshire New Hampshire genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986434 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/17.16/13/G mumps MF965246 2016-05-02 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965246 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017173/5.17/5/G mumps Washington_outbreak_110 2017-02-02 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/18.16/3/G mumps BCCDC79 2016-05-09 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Missouri.USA/46.16/2/G mumps Missouri_sample_6 2016-11-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/12.16/4/G mumps MF965293 2016-03-27 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965293 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017257/11.17/2/G mumps Washington_outbreak_52 2017-03-15 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017364/2.17/12/G mumps Washington_outbreak_80 2017-01-13 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/27.16/2/G mumps MF965208 2016-07-12 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965208 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/50.16/1/G mumps MF965198 2016-12-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965198 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/16.16/12/G mumps MF965258 2016-04-21 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965258 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017249/10.17/G mumps Washington_outbreak_48 2017-03-12 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/10.16/10/G mumps MF965219 2016-03-12 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965219 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/10.16/9/G mumps MF965270 2016-03-10 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965270 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017067/1.17/3/G mumps Washington_outbreak_7 2017-01-06 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017065/1.17/2/G mumps Washington_outbreak_6 2017-01-04 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/18.16/4/G mumps BCCDC31 2016-05-08 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/43.16/1/G mumps MF965236 2016-10-24 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965236 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Zhejiang.CHN/11.06/1 mumps KF170917 2006-03-16 China China Zhejiang Zhejiang genbank genome He et al https://www.ncbi.nlm.nih.gov/nuccore/KF170917 Mumps epidemiology and molecular charicterisation of mumps virus circulating in Zhejiang province, China during the period of 2005-2010 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Washington.USA/2017319/17.17/2/G mumps Washington_outbreak_35 2017-04-27 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/31.16/1/G mumps BCCDC17 2016-08-02 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/16.16/18/G mumps MF965288 2016-04-25 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965288 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/22.16/3/G mumps MF965294 2016-06-03 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965294 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Missouri.USA/50.16/G mumps Missouri_sample_7 2016-12-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017363/10.17/3/G mumps Washington_outbreak_39 2017-03-07 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/19.17/4/G mumps MG986416 2017-05-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986416 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ohio.USA/11.14/2/G mumps MG986426 2014-03-16 North America USA Ohio Ohio genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986426 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017388/12.17/7/G mumps Washington_outbreak_86 2017-03-23 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/27.16/1/G mumps MF965202 2016-07-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965202 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Kansas.USA/8.17/4/G mumps MG986456 2017-02-23 North America USA Kansas Kansas genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986456 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Missouri.USA/33.17/G mumps Missouri_sample_15 2017-08-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
NorthDakota.USA/14.17/G mumps MG986417 2017-04-07 North America USA North Dakota North Dakota genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986417 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017139/4.17/G mumps Washington_outbreak_65 2017-01-26 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017368/12.17/6/G mumps Washington_outbreak_57 2017-03-22 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Zhejiang.CHN/19.10 mumps KF170919 2010-05-14 China China Zhejiang Zhejiang genbank genome He et al https://www.ncbi.nlm.nih.gov/nuccore/KF170919 Mumps epidemiology and molecular charicterisation of mumps virus circulating in Zhejiang province, China during the period of 2005-2010 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/46.16/2/G mumps MF965212 2016-11-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965212 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/23.16/1/G mumps MF965314 2016-06-19 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965314 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ohio.USA/16.14/1/G mumps MG986449 2014-04-15 North America USA Ohio Ohio genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986449 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Manitoba.CAN/43.16/5/G mumps BCCDC22 2016-10-25 North America Canada Manitoba Manitoba bccdc genome Gardy et al ? Unpublished ? ? G
31170263 mumps LC325488 2017-XX-XX Japan Korea Japan Japan Japan genbank genome Hasegawa et al https://www.ncbi.nlm.nih.gov/nuccore/LC325488 Detection of Mumps rubulavirus Tokyo, Japan Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
ODATE-3 mumps AB600942 ? Japan Korea Japan Japan Japan genbank genome Saito et al https://www.ncbi.nlm.nih.gov/nuccore/AB600942 Isolation and characterization of mumps virus strains in a mumps outbreak with a high incidence of aseptic meningitis Microbiol. Immunol. 40 (4), 271-275 (1996) https://www.ncbi.nlm.nih.gov/pubmed/8709862 ?
Urabe_AM-9__parental_strain_ mumps AB000388 ? ? ? ? ? genbank genome Mori et al https://www.ncbi.nlm.nih.gov/nuccore/AB000388 Complete Nucleotide Sequence of the Mumps Virus Urabe Vaccine Strain Genomic cDNA Rinsho To Uirusu 23, 341-352 (1995) https://www.ncbi.nlm.nih.gov/pubmed/ ?
Washington.USA/2017031/50.16/4/G mumps Washington_outbreak_4 2016-12-13 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/15.17/2/G mumps Wisconsin_sample_23 2017-04-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/25.17/G mumps MG986441 2017-06-19 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986441 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017228/8.17/4/G mumps Washington_outbreak_17 2017-02-23 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/16.16/8/G mumps MF965245 2016-04-21 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965245 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Arkansas.USA/43.16/G mumps MK585590 2016-10-18 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585590 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017385/11.17/3/G mumps Washington_outbreak_83 2017-03-15 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/16.16/13/G mumps MF965200 2016-04-22 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965200 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/17.16/3/G mumps MF965296 2016-04-25 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965296 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/31.16/4/G mumps BCCDC59 2016-08-04 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
31170197 mumps LC325486 2017-XX-XX Japan Korea Japan Japan Japan genbank genome Hasegawa et al https://www.ncbi.nlm.nih.gov/nuccore/LC325486 Detection of Mumps rubulavirus Tokyo, Japan Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/16.16/15/G mumps MF965233 2016-04-22 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965233 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/18.17/G mumps MG986384 2017-05-04 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986384 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/9.17/G mumps MG986468 2017-02-27 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986468 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
NewYork/10.14/2/G mumps MG986398 2014-03-03 North America USA New York New York genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986398 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/22.17/G mumps MG986400 2017-05-30 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986400 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/45.16/7/G mumps MF965271 2016-11-15 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965271 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017318/17.17/G mumps Washington_outbreak_34 2017-04-25 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/8.16/1/G mumps MF965240 2016-02-24 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965240 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/31.16/2/G mumps BCCDC95 2016-08-04 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
BritishColumbia.CAN/18.16/2/G mumps BCCDC50 2016-05-07 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/30.16/1/G mumps MF965299 2016-08-01 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965299 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/39.16/1/G mumps MF965306 2016-10-03 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965306 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/21.16/3/G mumps BCCDC84 2016-05-24 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Ontario.CAN/06.17/4/G mumps Ontario_outbreak_9 2017-02-06 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Washington.USA/2017360/50.16/6/G mumps Washington_outbreak_29 2016-12-19 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/26.17/G mumps MG986408 2017-06-29 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986408 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
NewYork.USA/10.14/3/G mumps MG986436 2014-03-04 North America USA New York New York genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986436 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/17.16/12/G mumps MF965272 2016-05-02 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965272 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/29.16/5/G mumps BCCDC90 2016-07-22 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Alabama.USA/7.17/G mumps Alabama_sample_5 2017-02-XX North America USA Alabama Alabama fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/17.17/G mumps MG986435 2017-04-23 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986435 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
New_York.USA/40.09/1 mumps JX287390 2009-09-21 North America USA New York New York genbank genome Kirkness et al https://www.ncbi.nlm.nih.gov/nuccore/JX287390 Direct Submission Submitted (12-JUN-2012) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/ ?
attenuated_RS-12 mumps JQ388691 ? West Asia Iran Iran Iran genbank genome Alirezaie et al https://www.ncbi.nlm.nih.gov/nuccore/JQ388691 Wild and attenuated vaccine RS-12 strains of mumps virus exhibit differences in amino acid sequences of their proteins Acta Virol. 58 (3), 287-291 (2014) https://www.ncbi.nlm.nih.gov/pubmed/25283866 ?
Massachusetts.USA/25.17/5/G mumps MG986401 2017-06-21 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986401 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/15.06/4/A mumps Wisconsin_sample_5 2006-04-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? A
Washington.USA/2017330/19.17/G mumps Washington_outbreak_40 2017-05-10 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017165/6.17/G mumps Washington_outbreak_47 2017-02-06 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Glouc1/UK96 mumps AF280799 1996-XX-XX Europe United Kingdom England Gloucester genbank genome Jin et al https://www.ncbi.nlm.nih.gov/nuccore/AF280799 The genomic sequence of a contemporary wild-type mumps virus strain Virus Res. 70 (1-2), 75-83 (2000) https://www.ncbi.nlm.nih.gov/pubmed/11074127 ?
Kansas.USA/10.17/G mumps MG986429 2017-03-10 North America USA Kansas Kansas genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986429 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/28.06/G mumps Wisconsin_sample_27 2006-07-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/24.14/G mumps Wisconsin_sample_13 2014-06-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Novosibirsk.RUS/10.03-H mumps AY681495 2003-03-12 West Asia Russia Russia Russia genbank genome Agafonov et al https://www.ncbi.nlm.nih.gov/nuccore/AY681495 Isolation, genotyping and analysis of the complete nucleotide sequence of mumps virus Siberian strain Epidemiol Vakcinoprofil 5, 34-42 (2007) https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/15.16/1/G mumps MF965214 2016-04-12 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965214 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/18.16/G mumps BCCDC30 2016-05-04 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
RW154.USA/0.70s/K mumps KF878080 1970-XX-XX North America USA USA USA genbank genome Jin et al https://www.ncbi.nlm.nih.gov/nuccore/KF878080 Genomic diversity of mumps virus and global distribution of the 12 genotypes Rev. Med. Virol. (2014) In press https://www.ncbi.nlm.nih.gov/pubmed/25424978 K
Massachusetts.USA/10.16/6/G mumps MF965205 2016-03-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965205 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/26.16/1/G mumps BCCDC85 2016-06-27 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/16.16/14/G mumps MF965243 2016-04-22 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965243 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/7.07/2/G mumps Wisconsin_sample_8 2007-02-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Gabon/9.13/2/G mumps KJ810514 2013-03-01 Africa Gabon Gabon Gabon genbank genome Maganga et al https://www.ncbi.nlm.nih.gov/nuccore/KJ810514 Genotyping of Mumps virus strain ciruclating in Franceville, Gabon Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/45.16/4/G mumps MF965201 2016-11-11 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965201 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/46.16/7/G mumps MF965308 2016-11-17 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965308 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017145/4.17/5/G mumps Washington_outbreak_68 2017-01-30 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/28.16/1/G mumps BCCDC94 2016-07-11 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Kansas.USA/8.17/G mumps MG986432 2017-02-21 North America USA Kansas Kansas genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986432 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Arkansas.USA/44.16/G mumps MK585578 2016-10-26 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585578 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Leningrad-3 mumps JF727652 2010-XX-XX West Asia Russia Russia Russia genbank genome Sidorenko et al https://www.ncbi.nlm.nih.gov/nuccore/JF727652 Genetic stability and homogeneity of Leningrad-3 live attenuated mumps vaccine strain throughout the manufacturing process Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Massachusetts.USA/26.15/1/G mumps MF965222 2015-07-04 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965222 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/16.14/2/G mumps Wisconsin_sample_11 2014-04-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Texas.USA/18.17/G mumps MG986457 2017-05-05 North America USA Texas Texas genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986457 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Urabe mumps FJ375177 1996-09-XX North America Canada Canada Canada genbank genome Shah et al https://www.ncbi.nlm.nih.gov/nuccore/FJ375177 Identification of genetic mutations associated with attenuation and changes in tropism of Urabe mumps virus J. Med. Virol. 81 (1), 130-138 (2009) https://www.ncbi.nlm.nih.gov/pubmed/19031463 ?
Massachusetts.USA/11.16/3/G mumps MF965291 2016-03-16 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965291 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/33.16/2/G mumps BCCDC91 2016-08-18 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/17.16/6/G mumps MF965196 2016-04-25 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965196 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/45.16/2/G mumps MF965273 2016-11-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965273 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ohio.USA/16.14/2/G mumps MG986390 2014-04-15 North America USA Ohio Ohio genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986390 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Arkansas.USA/38.16/G mumps MK585612 2016-09-15 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585612 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
rOdate/AcGFP mumps LC420150 ? Japan Korea Japan Japan Japan genbank genome Katoh et al https://www.ncbi.nlm.nih.gov/nuccore/LC420150 Heat Shock Protein 90 Ensures Efficient Mumps Virus Replication by Assisting with Viral Polymerase Complex Formation J. Virol. 91 (6), e02220-16 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28053100 ?
Massachusetts.USA/11.16/4/G mumps MF965277 2016-03-18 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965277 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Michigan.USA/4.16/G mumps MG986419 2016-01-26 North America USA Michigan Michigan genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986419 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
NewJersey.USA/49.14/G mumps MG986418 2014-12-06 North America USA New Jersey New Jersey genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986418 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017105/2.17/9/G mumps Washington_outbreak_21 2017-01-13 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Ohio.USA/2.17/G mumps Ohio_sample_3 2017-01-XX North America USA Ohio Ohio fh genome Moncla et al ? Unpublished ? ? G
California.USA/50.07/1 mumps JX287386 2007-12-12 North America USA California California genbank genome Kirkness et al https://www.ncbi.nlm.nih.gov/nuccore/JX287386 Direct Submission Submitted (12-JUN-2012) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/ ?
Wisconsin.USA/37.06/G mumps Wisconsin_sample_6 2006-09-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
31170187 mumps LC325485 2017-XX-XX Japan Korea Japan Japan Japan genbank genome Hasegawa et al https://www.ncbi.nlm.nih.gov/nuccore/LC325485 Detection of Mumps rubulavirus Tokyo, Japan Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Washington.USA/2017340/20.17/2/G mumps Washington_outbreak_70 2017-05-21 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Dunedin.NZL/32.17/G mumps MG765427 2017-08-11 Oceania New Zealand ? ? genbank genome Dilcher et al https://www.ncbi.nlm.nih.gov/nuccore/MG765427 Monitoring viral genetic variation as a tool to improve molecular diagnostics for Mumps virus J. Clin. Microbiol. (2018) In press https://www.ncbi.nlm.nih.gov/pubmed/30021826 G
Alabama.USA/11.17/G mumps Alabama_sample_1 2017-03-XX North America USA Alabama Alabama fh genome Moncla et al ? Unpublished ? ? G
Wisconsin.USA/19.17/G mumps Wisconsin_sample_24 2017-05-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/19.17/3/G mumps MG986459 2017-05-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986459 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/23.17/2/G mumps MG986444 2017-06-07 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986444 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Split.CRO/05.11/G mumps JN635498 2011-02-05 Europe Croatia Croatia Croatia genbank genome Santak et al https://www.ncbi.nlm.nih.gov/nuccore/JN635498 Antigenic Differences between Vaccine and Circulating Wild Type Mumps Viruses Decreases Neutralization Capacity of Vaccine Induced Antibodies Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
31170254 mumps LC325487 2017-XX-XX Japan Korea Japan Japan Japan genbank genome Hasegawa et al https://www.ncbi.nlm.nih.gov/nuccore/LC325487 Detection of Mumps rubulavirus Tokyo, Japan Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
NK-M46.JPN/0.70_B___Vac_ mumps AB827968 ? Japan Korea Japan Japan Japan genbank genome Saika et al https://www.ncbi.nlm.nih.gov/nuccore/AB827968 Neurovirulence of mumps virus: intraspinal inoculation test in marmosets Biologicals 32 (3), 147-152 (2004) https://www.ncbi.nlm.nih.gov/pubmed/15536045 ?
Akita.JPN/42.93/I mumps KF878078 1993-10-22 Japan Korea Japan Japan Japan genbank genome Jin et al https://www.ncbi.nlm.nih.gov/nuccore/KF878078 Genomic diversity of mumps virus and global distribution of the 12 genotypes Rev. Med. Virol. (2014) In press https://www.ncbi.nlm.nih.gov/pubmed/25424978 I
Hoshino mumps MK279727 ? ? ? ? ? genbank genome Alirezaie et al https://www.ncbi.nlm.nih.gov/nuccore/MK279727 Direct Submission Submitted (08-DEC-2018) Human Viral Vaccines Department, Razi Vaccine and Serum Research Institute, Hessarak, Karaj, Alborz 11365/1558, Iran https://www.ncbi.nlm.nih.gov/pubmed/ ?
Arkansas.USA/48.16/G mumps MK585575 2016-11-21 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585575 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/19.16/1/G mumps MF965252 2016-05-08 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965252 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
BritishColumbia.CAN/28.16/5/G mumps BCCDC89 2016-07-13 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
BritishColumbia.CAN/42.16/G mumps BCCDC60 2016-10-17 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Massachusetts.USA/9.16/3/G mumps MF965286 2016-03-05 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965286 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
California.USA/40.11/G mumps KY969482 2011-10-08 North America USA California California genbank genome Espinosa et al https://www.ncbi.nlm.nih.gov/nuccore/KY969482 Direct Submission Submitted (20-APR-2017) Viral and Rickettsial Disease Laboratory, California Department of Public Health, 850 Marina Bay Parkway, Richmond, CA 94804, USA https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017384/9.17/5/K mumps Washington_outbreak_82 2017-02-28 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? K
BritishColumbia.CAN/18.17/2/G mumps BCCDC3 2017-05-05 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Washington.USA/2017018/49.16/3/G mumps Washington_outbreak_41 2016-12-10 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/7.17/2/G mumps MG986415 2017-02-18 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986415 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/11.07/G mumps Wisconsin_sample_9 2007-03-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/20.16/2/G mumps MF965312 2016-05-20 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965312 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/22.17/9/G mumps MG986389 2017-06-05 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986389 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
New_York.USA/40.09/4 mumps JX287391 2009-10-08 North America USA New York New York genbank genome Kirkness et al https://www.ncbi.nlm.nih.gov/nuccore/JX287391 Direct Submission Submitted (12-JUN-2012) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/ ?
Ontario.CAN/06.17/3/G mumps Ontario_outbreak_8 2017-02-08 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
BritishColumbia.CAN/13.16/G mumps BCCDC15 2016-04-01 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Washington.USA/2017325/17.17/4/G mumps Washington_outbreak_33 2017-05-02 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/21.16/2/G mumps BCCDC33 2016-05-23 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
87_1004 mumps AF314560 ? ? ? ? ? genbank genome Amexis et al https://www.ncbi.nlm.nih.gov/nuccore/AF314560 Correlation of genetic variability with safety of mumps vaccine Urabe AM9 strain Virology 287 (1), 234-241 (2001) https://www.ncbi.nlm.nih.gov/pubmed/11504558 ?
Massachusetts.USA/25.17/4/G mumps MG986462 2017-06-21 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986462 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/25.17/2/G mumps MG986431 2017-06-20 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986431 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017375/4.17/8/G mumps Washington_outbreak_101 2017-01-29 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/45.16/1/G mumps MF965285 2016-11-09 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965285 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Wisconsin.USA/7.07/G mumps Wisconsin_sample_26 2007-02-XX North America USA Wisconsin Wisconsin fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017011/49.16/G mumps Washington_outbreak_51 2016-12-07 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017088/2.17/4/G mumps Washington_outbreak_26 2017-01-12 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Indiana.USA/5.14/G mumps MG986387 2014-01-31 North America USA Indiana Indiana genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986387 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Chennai.IND/35.12/C mumps KF843896 2012-08-31 South Asia India India India genbank genome Vaidya et al https://www.ncbi.nlm.nih.gov/nuccore/KF843896 Complete genome sequence of mumps wild type strains isolated from India Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ C
BritishColumbia.CAN/25.16/5/G mumps BCCDC48 2016-06-22 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Washington.USA/2017195/7.17/G mumps Washington_outbreak_15 2017-02-15 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Massachusetts.USA/19.17/G mumps MG986386 2017-05-11 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986386 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/04.10/G mumps KY006857 2010-01-28 North America Canada Ontario Ontario genbank genome Eshaghi et al https://www.ncbi.nlm.nih.gov/nuccore/KY006857 A Review of Laboratory Testing During a Mumps Outbreak in Ontario, Canada Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017158/5.17/4/G mumps Washington_outbreak_46 2017-02-06 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
NewYork.USA/8.14/G mumps MG986395 2014-02-20 North America USA New York New York genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986395 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Ontario.CAN/12.17/1/G mumps Ontario_outbreak_12 2017-03-20 North America Canada Ontario Ontario Ontario-public-health-lab genome Stapleton et al ? Unpublished ? ? G
Washington.USA/2017370/3.17/6/G mumps Washington_outbreak_59 2017-01-19 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
No_designation_vaccine_related/A mumps BCCDC75 2017-02-28 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? A
Arkansas.USA/47.16/G mumps MK585577 2016-11-14 North America USA Arkansas Arkansas genbank genome Alkam et al https://www.ncbi.nlm.nih.gov/nuccore/MK585577 Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Massachusetts.USA/46.16/3/G mumps MF965229 2016-11-14 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MF965229 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Hikaru.JPN/22.97-B mumps AB823535 1997-06-04 Japan Korea Japan Japan Japan genbank genome Kidokoro et al https://www.ncbi.nlm.nih.gov/nuccore/AB823535 MuV isolate in Japan Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
Missouri.USA/15.17/2/G mumps Missouri_sample_12 2017-04-XX North America USA Missouri Missouri fh genome Moncla et al ? Unpublished ? ? G
Washington.USA/2017059/1.17/G mumps Washington_outbreak_5 2017-01-03 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
Pennsylvania.USA/19.16/G mumps MG986458 2016-05-10 North America USA Pennsylvania Pennsylvania genbank genome Bankamp et al https://www.ncbi.nlm.nih.gov/nuccore/MG986458 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
London.GBR/27.14/A mumps KX223397 2014-07-10 Europe United Kingdom England London genbank genome Morfopoulou et al https://www.ncbi.nlm.nih.gov/nuccore/KX223397 Deep sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis Acta Neuropathol. 133 (1), 139-147 (2017) https://www.ncbi.nlm.nih.gov/pubmed/27770235 A
02-49 mumps AB618040 ? Japan Korea Japan Japan Japan genbank genome Kidokoro et al https://www.ncbi.nlm.nih.gov/nuccore/AB618040 Characterization of mumps viruses circulating in mongolia: identification of a novel cluster of genotype h J. Clin. Microbiol. 49 (5), 1917-1925 (2011) https://www.ncbi.nlm.nih.gov/pubmed/21411578 ?
Washington.USA/2017177/5.17/7/G mumps Washington_outbreak_11 2017-02-08 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
SBL mumps D00663 ? ? ? ? ? genbank genome Elliott et al https://www.ncbi.nlm.nih.gov/nuccore/D00663 Nucleotide sequence of the matrix, fusion and putative SH protein genes of mumps virus and their deduced amino acid sequences Virus Res. 12 (1), 61-75 (1989) https://www.ncbi.nlm.nih.gov/pubmed/2718625 ?
31170132 mumps LC325482 2017-XX-XX Japan Korea Japan Japan Japan genbank genome Hasegawa et al https://www.ncbi.nlm.nih.gov/nuccore/LC325482 Detection of Mumps rubulavirus Tokyo, Japan Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ ?
BritishColumbia.CAN/21.16/4/G mumps BCCDC53 2016-05-25 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
Zagreb.HRV/28.12/G mumps KF481689 2012-07-15 Europe Croatia Croatia Croatia genbank genome Santak et al https://www.ncbi.nlm.nih.gov/nuccore/KF481689 Accumulation of defective interfering viral particles in only a few passages in Vero cells attenuates mumps virus neurovirulence Microbes Infect. 17 (3), 228-236 (2015) https://www.ncbi.nlm.nih.gov/pubmed/25479555 G
Massachusetts.USA/21.17/2/G mumps MG986437 2017-05-30 North America USA Massachusetts Massachusetts genbank genome Byrne et al https://www.ncbi.nlm.nih.gov/nuccore/MG986437 Mumps rubulavirus sample sequencing from the 2016-2017 outbreak in Massachusetts Unpublished https://www.ncbi.nlm.nih.gov/pubmed/ G
Washington.USA/2017386/11.17/4/G mumps Washington_outbreak_84 2017-03-15 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/34.16/2/F mumps BCCDC37 2016-08-27 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? F
Washington.USA/2017130/3.17/2/G mumps Washington_outbreak_24 2017-01-19 North America USA Washington Washington fh genome Moncla et al ? Unpublished ? ? G
BritishColumbia.CAN/28.16/6/G mumps BCCDC100 2016-07-14 North America Canada British Columbia British Columbia bccdc genome Gardy et al ? Unpublished ? ? G
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