Revision b574878c983651e9231d1251ee7cb1edc0762e0f authored by hariszaf on 06 August 2020, 12:41:15 UTC, committed by GitHub on 06 August 2020, 12:41:15 UTC
* Create setup_hz.py

* Create bindings_hz.cpp

* Create volestipy_hz.pyx

* Create bindings_hz.h

* Update bindings_hz.h

* Update bindings_hz.cpp

* Create volestipy_old.pyx

* Delete volestipy_hz.pyx

* Create bindings_old.cpp

* Delete bindings_hz.cpp

* Update bindings.cpp

* Create bindings_old.h

* Delete bindings_hz.h

* Create setup_old.py

* Delete setup_hz.py

* Update setup.py

* Update volestipy.pyx

* Update bindings.h

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update setup.py

* Update bindings.h

* Update setup.py

* Update setup_old.py

* Update bindings.cpp

* Update setup.py

* Update setup.py

* Update volestipy.pyx

* Update test1.py

* Create test1_old.py

* Update test1.py

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.h

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.h

* Update bindings.cpp

* Update bindings.h

* Update setup.py

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update volume_cb_hpolytope.cpp

* Update test1.py

* Update bindings.cpp

* Update test1.py

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Create .gitignore

* Delete test1_old.py

* Delete setup_old.py

* Delete bindings_old.h

* Delete bindings_old.cpp

* Delete volestipy_old.pyx

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update .gitignore

* Update volume_cb_hpolytope.cpp

* Update test1.py

* Update test2.py

* Update bindings.h

* Update setup.py

* Update credits.md

* on .gitignore: files on test/Testing/Temporary/ were removed from the .gitignore file

* first attempt - not working - for rounding

* rounding function: does not work; trying to figure it out

* round_val now works; still new_A and new_b need to be included

* Create metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update volestipy.pyx

* Update bindings.cpp

* Create test_rounding.py

* Create test1.py

* Create test2.py

* Delete test2.py

* Update test1.py

* Create metabolic_net_pipeline-checkpoint.ipynb

* Update setup.py

* Update .gitignore

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.h

* Update bindings.cpp

* Update bindings.cpp

* Update test1.py

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Create test_rounding.py

* Delete test1.py

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* Update test1.py

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Update bindings.cpp

print all dimensions of the variables included in cpp

* Update volestipy.pyx

print all dimensions of the variables included in cython

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update test_rounding.py

* Update bindings.cpp

* Update bindings.cpp

* Update volestipy.pyx

* Update volestipy.pyx

* Update bindings.cpp

correct the dimensions of the shift and the T_matrix; that was the cause of the strange memory errors we used to get (e.g free(): invalid pointer , Fatal Python error: GC object already tracked etc)

* Delete test_rounding.py

* Update test_rounding.py

* Update setup.py

* Update bindings.h

* Update bindings.cpp

remove print lines for checking dimensions

* Update volestipy.pyx

remove print lines for checking dimensions

* Update bindings.h

* Update bindings.cpp

better variable names

* Update volestipy.pyx

better variable names

* Update .gitignore

* Update test_rounding.py

* Update .gitignore

add .ipynb to the .gitignore of the branch

* Update .gitignore

* Update .gitignore

* Update .gitignore

* Delete metabolic_net_pipeline.ipynb

* Update bindings.cpp

change variables names

* Update bindings.cpp

change variable names - correct

* Delete metabolic_net_pipeline-checkpoint.ipynb

remove jupyter hidden directory

* Delete test1.py

* Delete test2.py

* Create test_compute_volume.py

test script for the compute_volume() function

* Create test_random_sampling.py

test script for the random_sampling() function

* Update test_rounding.py

test script for the rounding() function
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