Revision - b574878 - Rounding (#107) – Software Heritage archive

Revision b574878c983651e9231d1251ee7cb1edc0762e0f authored by hariszaf on 06 August 2020, 12:41:15 UTC, committed by GitHub on 06 August 2020, 12:41:15 UTC

Rounding (#107)

* Create setup_hz.py

* Create bindings_hz.cpp

* Create volestipy_hz.pyx

* Create bindings_hz.h

* Update bindings_hz.h

* Update bindings_hz.cpp

* Create volestipy_old.pyx

* Delete volestipy_hz.pyx

* Create bindings_old.cpp

* Delete bindings_hz.cpp

* Update bindings.cpp

* Create bindings_old.h

* Delete bindings_hz.h

* Create setup_old.py

* Delete setup_hz.py

* Update setup.py

* Update volestipy.pyx

* Update bindings.h

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update setup.py

* Update bindings.h

* Update setup.py

* Update setup_old.py

* Update bindings.cpp

* Update setup.py

* Update setup.py

* Update volestipy.pyx

* Update test1.py

* Create test1_old.py

* Update test1.py

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.h

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.h

* Update bindings.cpp

* Update bindings.h

* Update setup.py

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update volume_cb_hpolytope.cpp

* Update test1.py

* Update bindings.cpp

* Update test1.py

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Create .gitignore

* Delete test1_old.py

* Delete setup_old.py

* Delete bindings_old.h

* Delete bindings_old.cpp

* Delete volestipy_old.pyx

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update .gitignore

* Update volume_cb_hpolytope.cpp

* Update test1.py

* Update test2.py

* Update bindings.h

* Update setup.py

* Update credits.md

* on .gitignore: files on test/Testing/Temporary/ were removed from the .gitignore file

* first attempt - not working - for rounding

* rounding function: does not work; trying to figure it out

* round_val now works; still new_A and new_b need to be included

* Create metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update metabolic_net_pipeline.ipynb

* Update volestipy.pyx

* Update bindings.cpp

* Create test_rounding.py

* Create test1.py

* Create test2.py

* Delete test2.py

* Update test1.py

* Create metabolic_net_pipeline-checkpoint.ipynb

* Update setup.py

* Update .gitignore

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update bindings.h

* Update bindings.cpp

* Update bindings.cpp

* Update test1.py

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Create test_rounding.py

* Delete test1.py

* Update test_rounding.py

* Update test1.py

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Update bindings.h

* Update bindings.cpp

* Update volestipy.pyx

* Update test_rounding.py

* Update bindings.cpp

print all dimensions of the variables included in cpp

* Update volestipy.pyx

print all dimensions of the variables included in cython

* Update volestipy.pyx

* Update bindings.cpp

* Update bindings.h

* Update test_rounding.py

* Update bindings.cpp

* Update bindings.cpp

* Update volestipy.pyx

* Update volestipy.pyx

* Update bindings.cpp

correct the dimensions of the shift and the T_matrix; that was the cause of the strange memory errors we used to get (e.g free(): invalid pointer , Fatal Python error: GC object already tracked etc)

* Delete test_rounding.py

* Update test_rounding.py

* Update setup.py

* Update bindings.h

* Update bindings.cpp

remove print lines for checking dimensions

* Update volestipy.pyx

remove print lines for checking dimensions

* Update bindings.h

* Update bindings.cpp

better variable names

* Update volestipy.pyx

better variable names

* Update .gitignore

* Update test_rounding.py

* Update .gitignore

add .ipynb to the .gitignore of the branch

* Update .gitignore

* Update .gitignore

* Update .gitignore

* Delete metabolic_net_pipeline.ipynb

* Update bindings.cpp

change variables names

* Update bindings.cpp

change variable names - correct

* Delete metabolic_net_pipeline-checkpoint.ipynb

remove jupyter hidden directory

* Delete test1.py

* Delete test2.py

* Create test_compute_volume.py

test script for the compute_volume() function

* Create test_random_sampling.py

test script for the random_sampling() function

* Update test_rounding.py

test script for the rounding() function

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README.md

![logo](doc/logo/volesti_logo.jpg)

**VolEsti** is a `C++` library for volume approximation and sampling of convex bodies (*e.g.* polytopes) with an `R` and limited `python` interface. **VolEsti** is part of the [GeomScale](https://geomscale.github.io) project.

[![CRAN status](https://www.r-pkg.org/badges/version/volesti)](https://cran.r-project.org/package=volesti)
[![CRAN downloads](https://cranlogs.r-pkg.org/badges/volesti)](https://cran.r-project.org/package=volesti)
![CRAN/METACRAN](https://img.shields.io/cran/l/volesti)
[![Chat](https://badges.gitter.im/boostorg/geometry.png)](https://gitter.im/GeomScale/community?utm_source=share-link&utm_medium=link&utm_campaign=share-link)

### Test results

[![CRAN check](https://cranchecks.info/badges/worst/volesti)](https://cran.r-project.org/web/checks/check_results_volesti.html)
[![CircleCI master](https://circleci.com/gh/GeomScale/volume_approximation/tree/master.svg?style=shield)](https://circleci.com/gh/GeomScale/volume_approximation/tree/master)
[![CircleCI develop](https://circleci.com/gh/GeomScale/volume_approximation/tree/develop.svg?style=shield)](https://circleci.com/gh/GeomScale/volume_approximation/tree/develop)
[![gcc-test](https://github.com/GeomScale/volume_approximation/workflows/gcc-test/badge.svg)](https://github.com/GeomScale/volume_approximation/actions?query=workflow%3Agcc-test)
[![clang-test](https://github.com/GeomScale/volume_approximation/workflows/clang-test/badge.svg)](https://github.com/GeomScale/volume_approximation/actions?query=workflow%3Aclang-test)

[![R-CMD-ubuntu](https://github.com/GeomScale/volume_approximation/workflows/R-CMD-check-ubuntu/badge.svg)](https://github.com/GeomScale/volume_approximation/actions?query=workflow%3AR-CMD-ubuntu)
[![R-CMD-macOS](https://github.com/GeomScale/volume_approximation/workflows/R-CMD-check-macOS/badge.svg)](https://github.com/GeomScale/volume_approximation/actions?query=workflow%3AR-CMD-macOS)
[![R-CMD-windows](https://github.com/GeomScale/volume_approximation/workflows/R-CMD-check-windows/badge.svg)](https://github.com/GeomScale/volume_approximation/actions?query=workflow%3AR-CMD-windows)

###  Documentation

* [Using the R Interface](doc/r_interface.md)
* [Using the C++ Interface](doc/cpp_interface.md)
* [Using the Python Interface](volestipy/README.md)
* [Wikipage with Tutorials and Demos](https://github.com/GeomScale/volume_approximation/wiki)
* [Tutorial given to PyData meetup](https://vissarion.github.io/tutorials/volesti_tutorial_pydata.html)
* [Contributing](CONTRIBUTING.md)

### Credits

* [Contributors and Package History](doc/credits.md)
* [List of Publications](doc/publications.md)

Copyright (c) 2012-2020 Vissarion Fisikopoulos  
Copyright (c) 2018-2020 Apostolos Chalkis  

You may redistribute or modify the software under the GNU Lesser General Public License as published by Free Software Foundation, either version 3 of the License, or (at your option) any later version. It is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY.

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