| b5df4e3 | Thijs van der Plas | 28 January 2023, 17:15:52 UTC | update cite file | 28 January 2023, 17:15:52 UTC |
| 0e433f3 | Thijs van der Plas | 28 January 2023, 17:13:12 UTC | update cite file | 28 January 2023, 17:13:12 UTC |
| 713a911 | Thijs van der Plas | 28 January 2023, 17:11:31 UTC | add citation files | 28 January 2023, 17:11:31 UTC |
| a5b3d0f | Thijs van der Plas | 23 January 2023, 20:45:11 UTC | Merge pull request #1 from vdplasthijs/add-license-1 Create LICENSE | 23 January 2023, 20:45:11 UTC |
| 1622597 | Thijs van der Plas | 23 January 2023, 20:44:55 UTC | Create LICENSE | 23 January 2023, 20:44:55 UTC |
| 0d93747 | Thijs van der Plas | 23 January 2023, 20:32:08 UTC | update readme | 23 January 2023, 20:32:08 UTC |
| 3b249db | Thijs van der Plas | 23 January 2023, 20:25:23 UTC | tidy up repo | 23 January 2023, 20:25:23 UTC |
| 0dc1458 | Thijs | 13 December 2022, 09:17:16 UTC | gitignore | 13 December 2022, 09:17:16 UTC |
| cde7958 | Thijs | 23 November 2022, 14:27:44 UTC | Merge branch 'master' of https://github.com/vdplasthijs/zf-rbm | 23 November 2022, 14:27:44 UTC |
| ea5a7d0 | Thijs | 23 November 2022, 14:26:37 UTC | swapped sign vae weights | 23 November 2022, 14:26:37 UTC |
| b057f2f | Thijs van der Plas | 22 November 2022, 11:05:54 UTC | free param fig now with assemlby sizes | 22 November 2022, 11:05:54 UTC |
| a4bdb7d | Thijs van der Plas | 22 November 2022, 09:44:41 UTC | minor | 22 November 2022, 09:44:41 UTC |
| 4025aa5 | Thijs van der Plas | 20 November 2022, 22:52:22 UTC | assembly size fig | 20 November 2022, 22:52:22 UTC |
| 1961ea4 | Thijs | 20 November 2022, 21:59:55 UTC | Merge branch 'master' of https://github.com/vdplasthijs/zf-rbm | 20 November 2022, 21:59:55 UTC |
| 64ac163 | Thijs | 20 November 2022, 21:59:34 UTC | swap 2 panels | 20 November 2022, 21:59:34 UTC |
| 799e196 | Thijs van der Plas | 20 November 2022, 21:38:54 UTC | export weights of any rbm | 20 November 2022, 21:38:54 UTC |
| cd83755 | Thijs van der Plas | 19 November 2022, 21:39:18 UTC | export vae weights | 19 November 2022, 21:39:18 UTC |
| 148c696 | Thijs | 19 November 2022, 21:38:12 UTC | minor | 19 November 2022, 21:38:12 UTC |
| cdf03dd | Thijs | 19 November 2022, 19:14:36 UTC | change size fig | 19 November 2022, 19:14:36 UTC |
| fa95192 | Thijs | 19 November 2022, 19:08:08 UTC | fig vae | 19 November 2022, 19:08:08 UTC |
| 1babc4b | Thijs | 17 November 2022, 16:45:51 UTC | Merge branch 'master' of https://github.com/vdplasthijs/zf-rbm | 17 November 2022, 16:45:51 UTC |
| d462fd9 | Thijs | 17 November 2022, 16:45:49 UTC | Results VAE summary | 17 November 2022, 16:45:49 UTC |
| 32c81ee | thijs-bokma | 16 November 2022, 00:45:33 UTC | anova stats model selection | 16 November 2022, 00:45:33 UTC |
| 2ebef48 | Thijs | 13 November 2022, 13:44:22 UTC | minor | 13 November 2022, 13:44:22 UTC |
| fdc45a7 | Thijs | 11 November 2022, 21:55:26 UTC | minor | 11 November 2022, 21:55:26 UTC |
| 58c6c7d | Thijs | 11 November 2022, 21:53:17 UTC | decrease file sz nb | 11 November 2022, 21:53:17 UTC |
| b510b9a | Thijs | 11 November 2022, 14:36:39 UTC | vae fig | 11 November 2022, 14:36:39 UTC |
| f6d97ff | Thijs | 11 November 2022, 13:07:09 UTC | Merge branch 'master' of https://github.com/vdplasthijs/zf-rbm | 11 November 2022, 13:07:09 UTC |
| bdf6de2 | Thijs | 11 November 2022, 13:02:13 UTC | git ignore minor | 11 November 2022, 13:02:13 UTC |
| ce9d4c3 | Thijs | 11 November 2022, 13:01:15 UTC | vae results and minor changes | 11 November 2022, 13:01:15 UTC |
| ab1931f | thijs-bokma | 11 November 2022, 12:59:53 UTC | boxplots assemlby size and minor p val notation change | 11 November 2022, 12:59:53 UTC |
| da4b1a7 | thijs-bokma | 11 November 2022, 12:55:44 UTC | Merge remote-tracking branch 'origin/master' | 11 November 2022, 12:55:44 UTC |
| 6a256e3 | Thijs | 10 November 2022, 17:23:06 UTC | Merge branch 'master' of https://github.com/vdplasthijs/zf-rbm | 10 November 2022, 17:23:06 UTC |
| 358b4da | Thijs | 10 November 2022, 17:17:36 UTC | non-username specific setup | 10 November 2022, 17:17:36 UTC |
| e8f70b9 | thijs-bokma | 22 August 2022, 13:53:50 UTC | minor typo in fig | 22 August 2022, 13:53:50 UTC |
| fcd15ad | thijs-bokma | 17 August 2022, 15:29:46 UTC | update log scale and assembly embedding venn - log scale updated in funct vs struct connectivity - new fig of venn diagrams of assembly embeddings | 17 August 2022, 15:29:46 UTC |
| 31f15ee | thijs-bokma | 17 August 2022, 10:56:27 UTC | minor | 17 August 2022, 10:56:27 UTC |
| 107fee4 | thijs-bokma | 17 August 2022, 10:41:35 UTC | add pca to dynamics fig | 17 August 2022, 10:41:35 UTC |
| 95db317 | Thijs van der Plas | 17 August 2022, 10:39:11 UTC | very minor | 17 August 2022, 10:39:11 UTC |
| b73974a | thijs-bokma | 17 August 2022, 10:36:00 UTC | new nbs | 17 August 2022, 10:36:00 UTC |
| 537f9ad | thijs-bokma | 17 August 2022, 10:35:30 UTC | Merge remote-tracking branch 'origin/master' | 17 August 2022, 10:35:30 UTC |
| 9b592a6 | thijs-bokma | 17 August 2022, 10:35:24 UTC | gitignore update | 17 August 2022, 10:35:24 UTC |
| 9dbf91d | Thijs van der Plas | 15 June 2022, 13:17:54 UTC | Update README.md | 15 June 2022, 13:17:54 UTC |
| cb5d6e1 | thijs-bokma | 07 September 2021, 13:18:20 UTC | updated video with activity traces | 07 September 2021, 13:18:20 UTC |
| ec040c3 | thijs-bokma | 07 September 2021, 09:07:15 UTC | make supp video of assemblies | 07 September 2021, 09:07:15 UTC |
| 443c810 | thijs-bokma | 06 September 2021, 18:37:50 UTC | new and old yml files of py37 | 06 September 2021, 18:37:50 UTC |
| 8e654fa | thijs-bokma | 06 September 2021, 18:31:11 UTC | update log10 notation in connectivity figs | 06 September 2021, 18:31:11 UTC |
| 7c0157b | thijs-bokma | 06 September 2021, 18:14:46 UTC | minor updates to nbs | 06 September 2021, 18:14:46 UTC |
| 45aaa35 | thijs-bokma | 06 September 2021, 18:14:39 UTC | example assemblies for fig 3 | 06 September 2021, 18:14:39 UTC |
| 747e516 | thijs-bokma | 06 September 2021, 18:13:33 UTC | example notebook for matteo | 06 September 2021, 18:13:33 UTC |
| 40cf25a | thijs-bokma | 31 March 2021, 22:22:48 UTC | slight updates connectivity | 31 March 2021, 22:22:48 UTC |
| 87afbb0 | thijs-bokma | 31 March 2021, 11:01:15 UTC | updated connectiivty figs | 31 March 2021, 11:01:15 UTC |
| 80a7db0 | thijs-bokma | 29 March 2021, 13:01:42 UTC | time constants on segments separately | 29 March 2021, 13:01:42 UTC |
| c698131 | thijs-bokma | 24 March 2021, 14:33:20 UTC | update dynamics fig | 24 March 2021, 14:33:20 UTC |
| 70088fa | thijs-bokma | 16 March 2021, 10:59:22 UTC | updates v2 | 16 March 2021, 10:59:22 UTC |
| 9ecd983 | thijs-bokma | 19 February 2021, 18:48:35 UTC | update | 19 February 2021, 18:48:35 UTC |
| 2833b29 | thijs-bokma | 11 February 2021, 19:19:42 UTC | manual clustering | 11 February 2021, 19:19:42 UTC |
| 0e7325a | thijs-bokma | 11 February 2021, 18:18:58 UTC | cluster dynamic by pearson - cluster by pearson corr instead of euclidean distance - add dendogram to fig - change HU ordering - add pause in dynamics | 11 February 2021, 18:18:58 UTC |
| 4ee0544 | thijs-bokma | 10 February 2021, 20:31:31 UTC | updated rbm schematics | 10 February 2021, 20:31:31 UTC |
| 118f486 | thijs-bokma | 10 February 2021, 14:15:14 UTC | updated compositional fig | 10 February 2021, 14:15:14 UTC |
| bfd8172 | thijs-bokma | 09 February 2021, 19:38:49 UTC | compositional fig and small changes | 09 February 2021, 19:38:49 UTC |
| d92e4de | thijs-bokma | 29 January 2021, 15:59:08 UTC | small updates after group meeting | 29 January 2021, 15:59:08 UTC |
| a06198c | thijs-bokma | 28 January 2021, 17:44:48 UTC | Minor changes and new HU screenshots | 28 January 2021, 17:44:48 UTC |
| dc1ae34 | thijs-bokma | 28 January 2021, 11:17:18 UTC | update dynamics fig | 28 January 2021, 11:17:18 UTC |
| 47593be | thijs-bokma | 27 January 2021, 17:04:30 UTC | update model selection figure add schematic | 27 January 2021, 17:04:30 UTC |
| 252a6e3 | thijs-bokma | 27 January 2021, 16:38:56 UTC | update figures - finish connectivity figs - reorganise files HUs - finish intro fig panel C & B | 27 January 2021, 16:38:56 UTC |
| 66ad006 | thijs-bokma | 24 January 2021, 15:29:32 UTC | save my comments of jerome's code | 24 January 2021, 15:29:32 UTC |
| aae3a6a | thijs-bokma | 22 January 2021, 16:48:59 UTC | update intro connectivity figs | 22 January 2021, 16:48:59 UTC |
| e3761d5 | thijs-bokma | 21 January 2021, 13:30:52 UTC | minor changes to figures | 21 January 2021, 13:30:52 UTC |
| 08e6605 | thijs-bokma | 20 January 2021, 18:47:46 UTC | updated dynamics fig and minor other changes | 20 January 2021, 18:47:46 UTC |
| d1d28e9 | thijs-bokma | 19 January 2021, 17:28:42 UTC | minor changes | 19 January 2021, 17:28:42 UTC |
| 5378782 | thijs-bokma | 19 January 2021, 16:41:55 UTC | implemented jerome's code in mine | 19 January 2021, 16:41:55 UTC |
| dec415b | thijs-bokma | 19 January 2021, 10:38:14 UTC | jerome autocorrelation nb | 19 January 2021, 10:38:14 UTC |
| 150892d | thijs-bokma | 18 January 2021, 22:53:53 UTC | slight update model selection | 18 January 2021, 22:53:53 UTC |
| 8576619 | thijs-bokma | 18 January 2021, 22:18:57 UTC | new spatial sparsity figure slightly updated fig 1 | 18 January 2021, 22:18:57 UTC |
| eeb3482 | thijs-bokma | 15 January 2021, 14:42:06 UTC | figure 3 HU examples | 15 January 2021, 14:42:06 UTC |
| 9c39a10 | thijs-bokma | 14 January 2021, 17:50:38 UTC | intro figure improved | 14 January 2021, 17:50:38 UTC |
| 2512413 | thijs-bokma | 13 January 2021, 21:46:26 UTC | intro fig | 13 January 2021, 21:46:26 UTC |
| a9746bb | thijs-bokma | 13 January 2021, 13:32:56 UTC | new nb for HU screenshots | 13 January 2021, 13:32:56 UTC |
| d9c8a56 | thijs-bokma | 12 January 2021, 16:34:37 UTC | minor | 12 January 2021, 16:34:37 UTC |
| 23f1353 | thijs-bokma | 12 January 2021, 16:29:28 UTC | updated dynamics fig | 12 January 2021, 16:29:28 UTC |
| 4715779 | thijs-bokma | 12 January 2021, 15:38:35 UTC | update model selection figs | 12 January 2021, 15:38:35 UTC |
| 794fa59 | thijs-bokma | 12 January 2021, 14:53:48 UTC | combined HU figures | 12 January 2021, 14:53:48 UTC |
| 21965a4 | thijs-bokma | 08 December 2020, 00:27:29 UTC | kunst ea region sorting, polished plots | 08 December 2020, 00:27:29 UTC |
| 22dbebc | thijs-bokma | 07 December 2020, 14:58:59 UTC | add jerome's connectivity figure code | 07 December 2020, 14:58:59 UTC |
| 168d40e | thijs-bokma | 02 December 2020, 21:43:30 UTC | update part 2 | 02 December 2020, 21:43:30 UTC |
| 24e61e5 | thijs-bokma | 02 December 2020, 21:42:26 UTC | update HU with swapped negative weights and slight updates to figures | 02 December 2020, 21:42:26 UTC |
| 62df0bd | thijs-bokma | 30 November 2020, 17:20:37 UTC | updated fig 5 panels and swap RBM sign function | 30 November 2020, 17:20:37 UTC |
| bab071a | thijs-bokma | 26 November 2020, 19:53:54 UTC | figure draft before speaking with others | 26 November 2020, 19:53:54 UTC |
| 922dd09 | thijs-bokma | 23 November 2020, 22:12:54 UTC | free space | 23 November 2020, 22:12:54 UTC |
| d37f2b7 | thijs-bokma | 23 November 2020, 21:52:49 UTC | massive update | 23 November 2020, 21:52:49 UTC |
| 095b673 | thijs-bokma | 12 May 2020, 14:59:16 UTC | plot new normalised results | 12 May 2020, 14:59:16 UTC |
| 0d9021e | thijs-bokma | 10 May 2020, 14:15:23 UTC | delete old files and name changes | 10 May 2020, 14:15:23 UTC |
| 2afe683 | thijs-bokma | 10 May 2020, 14:14:53 UTC | figs train test stats | 10 May 2020, 14:14:53 UTC |
| 6182e1e | thijs-bokma | 10 May 2020, 14:14:35 UTC | inspect rbms | 10 May 2020, 14:14:35 UTC |
| 1a5949e | thijs-bokma | 10 May 2020, 14:14:08 UTC | notebook changes - folder name changes - model selection updates for histograms and parameter sweeps - inspect RBMs for simple checks | 10 May 2020, 14:14:08 UTC |
| c3e00a9 | thijs-bokma | 13 April 2020, 10:29:44 UTC | update notebook with train/test selection summary figs | 13 April 2020, 10:29:44 UTC |
| ad1cd4f | thijs-bokma | 19 March 2020, 14:08:17 UTC | UPdated train/test splitting | 19 March 2020, 14:08:17 UTC |
| 62fe18e | thijs-bokma | 10 March 2020, 21:51:02 UTC | Updates & train test select - load pf from dnp-code instead - add train test selection procedure in model selection notebook - misc | 10 March 2020, 21:51:02 UTC |
| 1125856 | thijs-bokma | 02 March 2020, 22:06:19 UTC | updated model sel fig | 02 March 2020, 22:06:19 UTC |
