b74da90 | Kim Rutherford | 24 January 2012, 06:26:50 UTC | Update to version v252 | 24 January 2012, 06:26:50 UTC |
78f8a39 | Kim Rutherford | 24 January 2012, 06:26:40 UTC | Add missing transactions | 24 January 2012, 06:26:40 UTC |
eb5a32c | Kim Rutherford | 24 January 2012, 06:16:02 UTC | Change names of states to make them more intelligible | 24 January 2012, 06:16:02 UTC |
8e52898 | Kim Rutherford | 24 January 2012, 04:31:57 UTC | Changed text to match tracker item #3477705 | 24 January 2012, 04:32:42 UTC |
1af109a | Kim Rutherford | 24 January 2012, 01:58:56 UTC | Whitespace fix | 24 January 2012, 01:58:56 UTC |
8cea882 | Kim Rutherford | 23 January 2012, 11:30:34 UTC | Test "finished" page after log-in | 24 January 2012, 01:58:00 UTC |
ba42ef2 | Kim Rutherford | 23 January 2012, 08:15:00 UTC | Added test for "submit to curator" button | 23 January 2012, 08:15:00 UTC |
0dea6e5 | Kim Rutherford | 23 January 2012, 08:09:20 UTC | Better error when accessing a non-existent status | 23 January 2012, 08:09:20 UTC |
21a61eb | Kim Rutherford | 23 January 2012, 08:07:35 UTC | Set the initial status when creating test databases | 23 January 2012, 08:07:35 UTC |
57fcda3 | Kim Rutherford | 22 January 2012, 12:01:57 UTC | Update to version v251 | 22 January 2012, 12:01:57 UTC |
81f5ff9 | Kim Rutherford | 22 January 2012, 12:01:54 UTC | Better messages when not logged in, in the CHECKING state | 22 January 2012, 12:01:54 UTC |
b674acb | Kim Rutherford | 22 January 2012, 11:56:58 UTC | Update to version v250 | 22 January 2012, 11:56:58 UTC |
2d1a907 | Kim Rutherford | 22 January 2012, 11:56:54 UTC | Fixes for CHECKING state; only allow admin to do checking | 22 January 2012, 11:56:54 UTC |
36a79db | Kim Rutherford | 22 January 2012, 11:28:39 UTC | Update to version v249 | 22 January 2012, 11:28:39 UTC |
10a0fc2 | Kim Rutherford | 22 January 2012, 11:28:13 UTC | Added new state "CHECKING" and added "notices" CSS | 22 January 2012, 11:28:13 UTC |
dd63d51 | Kim Rutherford | 22 January 2012, 01:28:55 UTC | Call store_statuses() whenever the status could change | 22 January 2012, 01:28:55 UTC |
4c1f668 | Kim Rutherford | 21 January 2012, 12:11:28 UTC | Show logged in emailed address | 21 January 2012, 12:12:48 UTC |
bd0dee8 | Kim Rutherford | 21 January 2012, 12:11:08 UTC | Set finished session state at the right time Also added reactivate_session(). | 21 January 2012, 12:12:48 UTC |
07b8c26 | Kim Rutherford | 21 January 2012, 11:28:17 UTC | Add _get_datetime() | 21 January 2012, 11:28:17 UTC |
ad555c8 | Kim Rutherford | 21 January 2012, 10:47:05 UTC | Better message for finished sessions | 21 January 2012, 10:47:05 UTC |
ef89894 | Kim Rutherford | 21 January 2012, 10:41:48 UTC | Rename "READY" state to "ACTIVE" | 21 January 2012, 10:41:48 UTC |
a99e1b8 | Kim Rutherford | 20 January 2012, 02:52:04 UTC | Update to version v248 | 20 January 2012, 02:52:04 UTC |
061be57 | Kim Rutherford | 20 January 2012, 02:49:22 UTC | Add gene count column to curs table | 20 January 2012, 02:49:22 UTC |
2f04703 | Kim Rutherford | 20 January 2012, 02:48:12 UTC | Change cursprop type name "session_genes_count" | 20 January 2012, 02:48:12 UTC |
3d6efae | Kim Rutherford | 20 January 2012, 02:05:01 UTC | Update to version v247 | 20 January 2012, 02:05:01 UTC |
88668a4 | Kim Rutherford | 20 January 2012, 01:52:32 UTC | Fix initialisation of cursprops | 20 January 2012, 01:52:32 UTC |
8c83264 | Kim Rutherford | 20 January 2012, 01:39:40 UTC | Add status column to curs and add finished_sessions report | 20 January 2012, 01:39:40 UTC |
513dcc1 | Kim Rutherford | 20 January 2012, 01:39:08 UTC | Cope better with computed fields | 20 January 2012, 01:39:08 UTC |
d74d2f6 | Kim Rutherford | 20 January 2012, 00:29:53 UTC | Fail gracefully if a curs DB is empty | 20 January 2012, 00:29:53 UTC |
067e27f | Kim Rutherford | 19 January 2012, 21:30:47 UTC | Update to version v246 | 19 January 2012, 21:30:47 UTC |
597d9f0 | Kim Rutherford | 19 January 2012, 21:30:40 UTC | Add missing Guard commit() | 19 January 2012, 21:30:40 UTC |
e49f283 | Kim Rutherford | 19 January 2012, 21:30:25 UTC | Add test for MetadataAccess | 19 January 2012, 21:30:25 UTC |
0824747 | Kim Rutherford | 19 January 2012, 21:29:39 UTC | Documentation fix | 19 January 2012, 21:29:39 UTC |
c88a4e2 | Kim Rutherford | 19 January 2012, 20:31:53 UTC | Fix constraint error in StatusStorage - don't store undef | 19 January 2012, 20:31:53 UTC |
ca47331 | Kim Rutherford | 19 January 2012, 20:26:48 UTC | Use a transaction in MetadataAccess::set_metadata() | 19 January 2012, 20:26:48 UTC |
caa5060 | Kim Rutherford | 19 January 2012, 20:25:02 UTC | Use a transaction in StatusStorage::store() | 19 January 2012, 20:25:02 UTC |
3d4515d | Kim Rutherford | 19 January 2012, 20:24:25 UTC | Check arguments of StatusStorage::store() | 19 January 2012, 20:24:25 UTC |
ae8fa2e | Kim Rutherford | 19 January 2012, 19:48:37 UTC | Update to version v245 | 19 January 2012, 19:48:37 UTC |
d126d7f | Kim Rutherford | 19 January 2012, 12:30:37 UTC | Remove debug code | 19 January 2012, 12:30:37 UTC |
dbe8f24 | Kim Rutherford | 19 January 2012, 12:30:27 UTC | Test fixes | 19 January 2012, 12:30:27 UTC |
3d552fe | Kim Rutherford | 19 January 2012, 12:05:45 UTC | Finished code for storing statuses in the TrackDB | 19 January 2012, 12:05:45 UTC |
1f1110d | Kim Rutherford | 19 January 2012, 04:14:03 UTC | Fixed 70_ontology_load.t | 19 January 2012, 04:14:03 UTC |
5371768 | Kim Rutherford | 19 January 2012, 04:10:28 UTC | Merge branch 'branch/status-storage-class' Conflicts: db_templates/track_db_template.sqlite3 lib/PomCur/CursDB.pm lib/PomCur/TrackDB.pm lib/PomCur/TrackDB/Curs.pm lib/PomCur/TrackDB/Cvterm.pm t/data/curs_aaaa0001.sqlite3 t/data/curs_aaaa0002.sqlite3 t/data/curs_aaaa0003.sqlite3 t/data/curs_aaaa0004.sqlite3 t/data/curs_aaaa0005.sqlite3 t/data/curs_aaaa0006.sqlite3 t/data/curs_aaaa0007.sqlite3 t/data/ontology_index/_1h.cfs t/data/ontology_index/segments t/data/track_0_curs_test_template.sqlite3 t/data/track_1_curs_test_template.sqlite3 t/data/track_3_curs_test_template.sqlite3 t/data/track_curs_annotations_1_test_template.sqlite3 t/data/track_curs_annotations_2_test_template.sqlite3 t/data/track_empty_db_test_template.sqlite3 | 19 January 2012, 04:10:28 UTC |
fb1c04c | Kim Rutherford | 19 January 2012, 03:02:55 UTC | Initial code for serialising cursprops | 19 January 2012, 03:02:55 UTC |
522ab42 | Kim Rutherford | 18 January 2012, 09:47:06 UTC | Finished implementing StatusStorage | 18 January 2012, 09:47:06 UTC |
1bcaad2 | Kim Rutherford | 18 January 2012, 05:36:49 UTC | Documentation fix | 18 January 2012, 05:36:49 UTC |
6dbb124 | Kim Rutherford | 18 January 2012, 02:50:31 UTC | Fixed error in comment syntax | 18 January 2012, 02:50:31 UTC |
e0539d2 | Kim Rutherford | 10 January 2012, 21:18:42 UTC | Update to version v244 | 10 January 2012, 21:18:42 UTC |
01d31ae | Kim Rutherford | 10 January 2012, 21:18:34 UTC | Fix list searching to ignore case | 10 January 2012, 21:18:34 UTC |
9385d1b | Kim Rutherford | 09 January 2012, 12:07:05 UTC | Update to version v243 | 09 January 2012, 12:07:05 UTC |
bec1632 | Kim Rutherford | 09 January 2012, 12:06:44 UTC | Add list of referenced features in dbxref template | 09 January 2012, 12:06:44 UTC |
1d8a577 | Kim Rutherford | 09 January 2012, 05:48:02 UTC | Add a list of the cvterms from cvterm_dbxref to dbxref.mhtml | 09 January 2012, 05:48:02 UTC |
6cbfcb6 | Kim Rutherford | 09 January 2012, 05:22:22 UTC | Put dbxref fields in a better order and add cvterm | 09 January 2012, 05:23:46 UTC |
3dca007 | Kim Rutherford | 09 January 2012, 05:22:00 UTC | Add a default template for dbxref | 09 January 2012, 05:22:00 UTC |
68fc2b5 | Kim Rutherford | 09 January 2012, 03:19:29 UTC | Show count of accessions/dbxrefs per db in db list | 09 January 2012, 03:19:29 UTC |
7419d8c | Kim Rutherford | 09 January 2012, 03:18:55 UTC | Add a template for db | 09 January 2012, 03:18:55 UTC |
d2390bd | Kim Rutherford | 30 December 2011, 11:19:55 UTC | Change CV display name | 30 December 2011, 11:19:55 UTC |
e7b0b66 | Kim Rutherford | 30 December 2011, 04:24:45 UTC | Change test annotation to IDA | 30 December 2011, 04:24:45 UTC |
8c3dadd | Kim Rutherford | 20 December 2011, 04:55:15 UTC | Add a PSI-MOD annotation to the test data | 20 December 2011, 04:55:15 UTC |
f3f3acd | Kim Rutherford | 19 December 2011, 14:54:44 UTC | Remove unused metadata "current_gene_id" to match [935addfe] | 19 December 2011, 14:54:53 UTC |
26517cb | Kim Rutherford | 19 December 2011, 02:47:48 UTC | Added more test annotations with an annotation_extension | 19 December 2011, 02:47:48 UTC |
1cf4ea3 | Kim Rutherford | 18 December 2011, 10:55:33 UTC | Fix FYPO ID in the test data | 18 December 2011, 10:55:33 UTC |
d2a849b | Kim Rutherford | 18 December 2011, 09:24:33 UTC | Change made up evidence code (MIU) to a real one | 18 December 2011, 09:24:33 UTC |
562218d | Kim Rutherford | 18 December 2011, 09:12:10 UTC | Fix pombe phenotype DB name to FYPO from PP | 18 December 2011, 09:12:10 UTC |
0ca4e1b | Kim Rutherford | 17 December 2011, 10:56:52 UTC | Don't rely on gene uniquename being unique bewteen organisms | 17 December 2011, 10:56:52 UTC |
0ce58b7 | Kim Rutherford | 17 December 2011, 10:51:13 UTC | Use a more exciting lcoal test data set | 17 December 2011, 10:51:13 UTC |
cfe47ef | Kim Rutherford | 17 December 2011, 02:56:35 UTC | Rename "term_ontid" to "term" in export | 17 December 2011, 02:56:35 UTC |
629d271 | Kim Rutherford | 16 December 2011, 23:39:19 UTC | Test partial dump/export | 16 December 2011, 23:39:19 UTC |
d6116c2 | Kim Rutherford | 16 December 2011, 11:40:34 UTC | Make lab.name in track schema UNIQUE | 16 December 2011, 11:40:34 UTC |
0df4dc9 | Kim Rutherford | 16 December 2011, 11:38:33 UTC | Fixed to match [3bf575ec8a53718] | 16 December 2011, 11:38:33 UTC |
177dacd | Kim Rutherford | 16 December 2011, 10:38:55 UTC | Serialise people and labs | 16 December 2011, 10:38:55 UTC |
fbda148 | Kim Rutherford | 16 December 2011, 10:11:23 UTC | Export the pub_curation_status table | 16 December 2011, 10:11:23 UTC |
d0a453c | Kim Rutherford | 16 December 2011, 10:01:49 UTC | Make pomcur_export.pl and export code more modular | 16 December 2011, 10:02:00 UTC |
b5a2f36 | Kim Rutherford | 16 December 2011, 09:34:26 UTC | Add dump_all option to serialisation code | 16 December 2011, 09:34:26 UTC |
672fd92 | Kim Rutherford | 16 December 2011, 00:22:17 UTC | Prepare code for stream_mode serialisation | 16 December 2011, 00:22:17 UTC |
921ca9b | Kim Rutherford | 15 December 2011, 23:59:59 UTC | Rename serialise test | 15 December 2011, 23:59:59 UTC |
9490eae | Kim Rutherford | 15 December 2011, 23:47:39 UTC | Make curs keys a consistent number of characters | 15 December 2011, 23:57:25 UTC |
e81298d | Kim Rutherford | 15 December 2011, 11:52:34 UTC | Documentation fix | 15 December 2011, 11:52:34 UTC |
33e7edb | Kim Rutherford | 13 December 2011, 11:51:01 UTC | Fix broken hash bang line | 13 December 2011, 11:51:01 UTC |
b817aca | Kim Rutherford | 06 December 2011, 08:59:01 UTC | Update to version v242 | 06 December 2011, 08:59:01 UTC |
0f23276 | Kim Rutherford | 06 December 2011, 08:58:53 UTC | Add public_mode | 06 December 2011, 08:58:53 UTC |
8643d87 | Kim Rutherford | 06 December 2011, 07:50:03 UTC | Added documentation | 06 December 2011, 07:50:03 UTC |
087013c | Kim Rutherford | 05 December 2011, 09:06:22 UTC | Update to version v241 | 05 December 2011, 09:06:22 UTC |
3de9679 | Kim Rutherford | 05 December 2011, 09:06:17 UTC | Fixed link to AmiGO | 05 December 2011, 09:06:17 UTC |
3abf16d | Kim Rutherford | 04 December 2011, 11:04:35 UTC | Update to version v240 | 04 December 2011, 11:04:35 UTC |
b2f7250 | Kim Rutherford | 04 December 2011, 11:04:29 UTC | Force users to log in before viewing anything | 04 December 2011, 11:04:29 UTC |
78652b6 | Kim Rutherford | 28 November 2011, 02:32:33 UTC | Make cvterm.dbxref editable | 28 November 2011, 02:32:33 UTC |
effb1fd | Kim Rutherford | 28 November 2011, 02:24:00 UTC | Added link to PomBase from the curation tool | 28 November 2011, 02:24:00 UTC |
915cc75 | Kim Rutherford | 27 November 2011, 10:48:36 UTC | Show parent(s) of cvterms | 27 November 2011, 10:48:58 UTC |
ab089bb | Kim Rutherford | 27 November 2011, 10:48:11 UTC | Update to version v239 | 27 November 2011, 10:48:11 UTC |
9265512 | Kim Rutherford | 27 November 2011, 10:47:56 UTC | Don't allow an annotation extension to be empty | 27 November 2011, 10:47:56 UTC |
d154504 | Kim Rutherford | 17 November 2011, 10:45:00 UTC | Update to version v238 | 17 November 2011, 10:45:00 UTC |
66de266 | Kim Rutherford | 17 November 2011, 10:44:52 UTC | Temporarily show annotation extensions when not logged in | 17 November 2011, 10:44:52 UTC |
73288c7 | Kim Rutherford | 16 November 2011, 21:01:02 UTC | Update to version v237 | 16 November 2011, 21:01:02 UTC |
87f8d2d | Kim Rutherford | 15 November 2011, 15:19:08 UTC | Add "reporter gene assay" evidence code | 15 November 2011, 15:19:08 UTC |
3048e22 | Kim Rutherford | 15 November 2011, 15:18:36 UTC | Fill in evidence name automatically when not configured | 15 November 2011, 15:18:36 UTC |
4ef2d3e | Kim Rutherford | 15 November 2011, 15:04:02 UTC | Change release script to put arguments in the right order The --workers flag was being ignored. | 15 November 2011, 15:04:02 UTC |
c38de93 | Kim Rutherford | 09 November 2011, 03:00:21 UTC | Update to version v236 | 09 November 2011, 03:00:21 UTC |
1a482de | Kim Rutherford | 09 November 2011, 02:01:35 UTC | Increase the max_inline_results_length | 09 November 2011, 02:01:35 UTC |
b5e0166 | Kim Rutherford | 07 November 2011, 08:52:47 UTC | Add ID | 07 November 2011, 08:52:47 UTC |