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Revision b7e3088e28025ac34513778ccb23368246fc532c authored by Victoria Sugrue on 18 June 2021, 08:47:24 UTC, committed by GitHub on 18 June 2021, 08:47:24 UTC 
Update README.md
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intersect_updated.sh 
module load BEDTools

readarray folders < folders.txt # Each folder has a fraction of the total BED files from the Cistrome database
for i in ${folders[@]}
do
	intersectBed -a random_probes/filename_temp.bed -b human_factor_split/human_factor_$i/*bed -wa -wb -filenames > analysis_raw_results/filename_temp_intersect_$i.bed
done

cat analysis_raw_results/filename_temp_intersect_* > analysis_raw_results/filename_temp_results.bed
rm analysis_raw_results/filename_temp_intersect_*
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