Revision ba0dc5ddaad56dea2d6207a14b2087832e8d2211 authored by Collin Capano on 16 September 2017, 22:10:52 UTC, committed by Soumi De on 16 September 2017, 22:10:52 UTC
* first pass at adding CustomTransform class

* add functions

* add from config, remove inverse for now

* add waveform transforms to likelihood

* add waveform transforms to pycbc_inference

* fix bugs

* fix more bugs

* fix doc
1 parent 5c16927
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pycbc_split_inspinj
#!/usr/bin/env /usr/bin/python

# Copyright (C) 2014 Andrew Lundgren
import sys
import argparse
import pycbc_glue.ligolw.utils
import pycbc_glue.ligolw.table
from pycbc_glue.ligolw import ligolw, lsctables
from itertools import cycle
import pycbc.version


# The following is required for reasons
class LIGOLWContentHandler(ligolw.LIGOLWContentHandler):
    pass

# Parse command line
parser = argparse.ArgumentParser()
parser.add_argument("--version", action="version",
                    version=pycbc.version.git_verbose_msg)
group = parser.add_mutually_exclusive_group(required=True)
group.add_argument("-n", "--num-splits", type=int,
                   help="Number of files to be generated")
group.add_argument("-f", "--output-files", nargs='*', default=None,
                   help="Names of output files")

parser.add_argument("-i", "--input-file", help="Injection file to be split")
parser.add_argument("-o", "--output-dir", default=None,
                    help="Location of output files")

args = parser.parse_args()

if args.output_files and args.output_dir:
    parser.error("Provide only one of --output-dir or --output-files")

# The XML reading will hang if you forget this line
lsctables.use_in(LIGOLWContentHandler)

# Read in input file
xmldoc = pycbc_glue.ligolw.utils.load_filename\
    (args.input_file, verbose=True, contenthandler=LIGOLWContentHandler)
tabletype = lsctables.SimInspiralTable
allinjs = tabletype.get_table(xmldoc)

# The sim_inspiral table is a grandchild of the document, I guess
xmlroot = xmldoc.childNodes[0]

xmlroot.removeChild(allinjs)

if args.num_splits:
    num_splits = args.num_splits
else:
    num_splits = len(args.output_files)

new_inj_tables = [lsctables.New(tabletype, columns=allinjs.columnnames) \
                  for idx in xrange(num_splits)]

table_cycle = cycle(new_inj_tables)
for inj in sorted(allinjs, key=lambda x: x.get_time_geocent()):
    table_cycle.next().append(inj)

if not args.output_files:
    temp = args.input_file.split('-')
    temp[1] += '_%.4u'
    filename_pattern = '-'.join(temp)

for idx, simtable in enumerate(new_inj_tables):
    xmlroot.appendChild(simtable)
    if not args.output_files:
        out_path = args.output_dir + '/' + filename_pattern % idx
    else:
        out_path = args.output_files[idx]
    pycbc_glue.ligolw.utils.write_filename(xmldoc, out_path,
                                           gz=out_path.endswith('gz'))
    xmlroot.removeChild(simtable)
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