https://github.com/sanger-pathogens/gubbins
Revision bc277a3a66067c5528cc9cfc9c0f2fbb7bcd24a4 authored by andrewjpage on 14 November 2014, 13:11:59 UTC, committed by andrewjpage on 14 November 2014, 13:11:59 UTC
warning message when changing number of threads
Tip revision: bc277a3a66067c5528cc9cfc9c0f2fbb7bcd24a4 authored by andrewjpage on 14 November 2014, 13:11:59 UTC
Merge pull request #116 from andrewjpage/change_raxml_exec_search_order
Merge pull request #116 from andrewjpage/change_raxml_exec_search_order
Tip revision: bc277a3
ChangeLog
2012-11-2 Andrew J. Page <ap13@sanger.ac.uk>
* Prefilters the initial alignment, ignoring sequences with >25% missing data (the '--filter_percentage' parameter lets you vary this).
* SNPs are outputted on a per branch basis in tab format.
* The stats are now on a per branch basis rather than cumulatively built up from walking the tree.
* Node labelling in the recombination tab file now consistent with the tree internal node labels
2012-8-7 Andrew J. Page <ap13@sanger.ac.uk>
* Cleanup intermediate files by default
* Fix RF distance calculation and comparison
2012-4-24 Andrew J. Page <ap13@sanger.ac.uk>
* Initial beta testing version
Computing file changes ...
