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Revision bc6bc5271ca8c2cbf8107bdf243352e543f64b8e authored by Brian Angeles (Desktop) on 20 March 2023, 22:34:45 UTC, committed by Brian Angeles (Desktop) on 20 March 2023, 22:34:45 UTC
Added .gitignore file and removed RigChoice.s2s
As a first step to generalizing the code, we removed the need to
comment/uncomment the appropriate rig-specific parameters file and
replace it with a local rig_config.s2s file that is ignored by Git. This
way, changes can be made to this simple file without affecting the
Github repository at all.
1 parent 3d78fa7
Raw File Download
addChanBrainstorm.m 
%% Open File
clear;clc;
dbstop if error
smrFile = 'G:\My Drive\Expmt Data\2019_07 - Alex Bonsai+Spike2 Sync Test Files\08301\data08301.smr';

%% Step 1 Allign Data

% Read Bonsai csv Files
dataTable = readtable('G:\My Drive\Expmt Data\2019_07 - Alex Bonsai+Spike2 Sync Test Files\08301\data08301original.csv');

% Extract the Time Stamps
timeStamps_bonsai = dataTable.Var1;

% Use only relative time
timeStamps_bonsai = timeStamps_bonsai - timeStamps_bonsai(1);

% Extract TTL+ Pulses from smr file
chanlist = readSpikeFile(smrFile,[]);
chanindsAll = [chanlist.number];
rawdata = importSpike(smrFile,chanindsAll(13));
pulseTimes_start = rawdata(1).data;

% ms --> s
timeStamps_bonsai = timeStamps_bonsai ./ 1000;


%% Frames
sampleLen = timeStamps_bonsai(2:end)-timeStamps_bonsai(1:end-1);
meanFR = mean(sampleLen);
stdFR = std(sampleLen);


%% Step 2 SMR Modification

% Copy File
newSmrHandle = smrCopy(smrFile, '_FP');

% Add first channel
data = dataTable.Var3*100;
samplerate = 1/meanFR;
title = 'chan1';
units = 'n/a';
smrAddChan(newSmrHandle, data, samplerate, title, units, pulseTimes_start);

% Add Second Channel
data = dataTable.Var4*1000;
samplerate = 1/meanFR;
title = 'chan2';
units = 'n/a';
smrAddChan(newSmrHandle, data, samplerate, title, units, pulseTimes_start);

%% tidy up
CEDS64CloseAll();
unloadlibrary ceds64int;