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Revision Author Date Message Commit Date
bdcd9c0 Fix a bug in opening gzip vcf files (open in 'rt' mode to fix). 19 February 2020, 16:12:50 UTC
a258885 fix open rU mode deprecation warning 15 February 2020, 17:08:33 UTC
66a594a Update README.md 15 February 2020, 17:08:07 UTC
aaf80ea remove xrange 12 September 2019, 18:00:57 UTC
128d82b Fix 2d sfs for fsc2 18 July 2019, 16:07:03 UTC
4e5b9a5 Transpose the pop0/pop1 ids in the fsc2 joint SFS 14 July 2019, 08:52:57 UTC
1132100 Fix removing samples in list not in vcf - Thanks to Annabel Beichman 06 December 2018, 23:31:20 UTC
c7261e6 Update README.md 15 October 2018, 21:38:03 UTC
02f2082 update the usage 08 October 2018, 17:24:27 UTC
5e84efd ignore .gz files 13 September 2018, 22:52:16 UTC
a051ec6 Merge branch 'master' of https://github.com/isaacovercast/easySFS 13 September 2018, 22:51:55 UTC
6ccf754 Adding momi sfs export code even though it doesn't work right now. 13 September 2018, 22:53:47 UTC
75991e2 Show possible preview keeping all samples. 13 September 2018, 22:51:52 UTC
c7b9e8e Updating notebooks 13 September 2018, 22:47:47 UTC
8cf6d05 Fix a hideous bug counting heterozygotes 09 September 2018, 22:27:12 UTC
420e6cb fix momi nb 09 September 2018, 22:26:04 UTC
9ac5761 updates to momi analysis nb 09 September 2018, 22:24:56 UTC
03b9f36 update momi nb 04 September 2018, 00:56:40 UTC
8b5e016 Merge branch 'master' of https://github.com/isaacovercast/easySFS 04 September 2018, 00:56:19 UTC
3443059 add simdata nb 04 September 2018, 00:56:17 UTC
910c9b3 add momi analysis nb 04 September 2018, 00:55:00 UTC
cc20f4c adding notebook 03 September 2018, 21:53:28 UTC
e1ed1a5 Naming fix for MAF/DAF fsc files 31 August 2018, 21:29:01 UTC
727ace9 Add a more informative error message if the input vcf is malformed. 05 April 2018, 14:45:23 UTC
ac7e411 typo 03 April 2018, 12:43:42 UTC
9c238bd Set default mask corners to true. 07 March 2018, 15:50:24 UTC
ef57f46 Delete leuco_pops.txt 27 October 2017, 15:55:26 UTC
b223517 Delete leuco_1200.vcf 27 October 2017, 15:55:15 UTC
1206be3 Add support for true haploid calls. 04 August 2017, 15:44:30 UTC
81c66aa Populations are written out to SFS in the order they occur in the pops file. 19 April 2017, 13:21:01 UTC
b427d0e Fix readme errors. 19 April 2017, 11:00:00 UTC
ddf6f88 oops fixed broken jointMAF format. 30 November 2016, 19:06:33 UTC
3babf8c Added dtype flag to write out int bins instead of float. 18 November 2016, 04:11:08 UTC
94f9f19 Adding support for gzipped vcf files. 18 November 2016, 00:30:25 UTC
87753f6 Add the --unfolded flag to support polarized vcf. 21 October 2016, 18:25:16 UTC
50d24c1 Clarified some of the docs. 21 October 2016, 18:07:09 UTC
9f8162a Merge branch 'master' of https://github.com/isaacovercast/easySFS 11 October 2016, 16:04:24 UTC
12b8d4a Fixed a ploidy bug in preview, and added support for vcf files w/ genotype info. 11 October 2016, 16:04:13 UTC
ee71643 Better handling for removing diffs btwn populations file and inds in the vcf 16 September 2016, 20:49:52 UTC
aa2acfd Update README.md 15 August 2016, 21:16:58 UTC
6d2c61a Merge branch 'master' of https://github.com/isaacovercast/easySFS 15 August 2016, 21:05:22 UTC
7447413 cosmetic change to usage for -a 15 August 2016, 21:05:11 UTC
9e01b3c Update README.md 15 August 2016, 21:02:01 UTC
cd30577 Update README.md 15 August 2016, 20:57:23 UTC
d2a5fc7 More info about output files 15 August 2016, 20:16:12 UTC
b789116 Fixed --preview output, and made --preview not try to write the datadict file 15 August 2016, 19:33:42 UTC
cbf684a More info on input file formats 15 August 2016, 19:25:20 UTC
c52c4e0 cosmetic change 15 August 2016, 19:19:19 UTC
ccda059 Updating example run docs 15 August 2016, 19:18:14 UTC
5781620 More docs 15 August 2016, 19:01:36 UTC
4fe4c7e Adding some meager docs 15 August 2016, 18:55:24 UTC
1ebf38a Initial commit of easySFS script and example files 15 August 2016, 18:08:56 UTC
cd7045f Initial commit 15 August 2016, 18:07:25 UTC
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