## Lee & Wing 2021  

### Absolute quantitation of individual SARS-CoV-2 RNA molecules: a new paradigm for infection dynamics and variant differences  

This repository contains source codes for reproducing figures presented in the Lee & Wing SARS-CoV-2 smFISH manuscript [eLife link](https://elifesciences.org/articles/74153).  

Check out the promotional video explaining our work (simple English) - [Lab twitter link](https://twitter.com/ilandavislab/status/1487396079142416389?s=20&t=UMhSP_achh5Sp-3NFdCNZQ). 

<img src="https://github.com/jefflee1103/Lee_Wing-SARS2/raw/main/Graphical_abstract.png" width="500" height="500">   

### Data table availability

Data tables used for figure generation can be found under `smFISH/data_plotting/data/`  

### Code availability

Bigfish analysis pipeline and other codes used for the image analysis can be found under  
`smFISH/analysis-codes/`  
Scripts used to generate the presented figures are available in the R Markdown format under  
`smFISH/data_plotting/`  

### Contact

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