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https://github.com/genome/genome
23 March 2024, 19:04:16 UTC
Revision c0c5361dc0f5e319011db9ed036146bd75fc0fe3 authored by Scott Smith on 14 January 2013, 13:27:35 UTC, committed by Scott Smith on 14 January 2013, 13:27:35 UTC 
cleanup Genome::Model
 
The updated Genome::Model class now has doc lines for everything.

The subject_class_name property is now an indirect accessor instead of
r/w.  The column in the db (non-nullable) is now bound to
_subject_class_name until all old snapshots are removed, and it can
be dropped.

Properties which are deprecated but still needed by things which
are not using ModelDeprecated as a base class (tweeners) are
in their own section.

Pipelines such as ClinSeq can now abandon ModelDeprecated completely,
and hopefully somatic variation will follow soon.

Notes are present throughout the module as to the status of legacy
parts.
1 parent 8a031ad
History
Tip revision: c0c5361dc0f5e319011db9ed036146bd75fc0fe3 authored by Scott Smith on 14 January 2013, 13:27:35 UTC
cleanup Genome::Model
Tip revision: c0c5361
File Mode Size
alignment_summary @ 8932081
bam-readcount @ c044123
bam-window @ 16db84f
bassovac @ 41b7bc4
bin
breakdancer @ 8f07f3d
cron @ 9bb5f1f
fqgrep @ fe0206d
genome-db-cosmic @ bdec904
genome-db-omim @ d9b949a
genome-db-pfam @ e5acfb0
genome-music
genome-music-testdata @ 860ea75
genome-snapshot-deps @ b8462fe
genome-snapshot-testdata @ 72c0ded
genome-sys-user
genome-webserver
genome-www
getopt-complete @ 4094a60
gmt-sys-vmbuilder
graphite @ f552b86
init
jenkins @ 00dc37d
joinx @ e83e763
lib
pairoscope @ 91c203a
scripts
sff2fastq @ b815f97
somatic-sniper @ d736546
tgi-etc @ 08ba1a6
tigra @ 6fe6b74
tigra-sv @ 715dda8
ur @ fbfa32b
varscan @ 83ae9d8
vendor
workflow @ 32a3a01
.gitignore -rw-r--r-- 67 bytes
.gitmodules -rw-r--r-- 8.1 KB
.test-tracker.conf -rw-r--r-- 216 bytes
LICENSE -rw-r--r-- 7.5 KB
README -rw-r--r-- 154 bytes
WHERE_TO_PUT_CODE -rw-r--r-- 2.4 KB
create-c-project.sh -rwxr-xr-x 2.9 KB
create-project -rwxr-xr-x 2.9 KB
test-data-relocate-me l--------- 46 bytes

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