Revision c27039c7cef802a6cfe1eb332c92401bdee18861 authored by Martin Schlather on 05 October 2012, 00:00:00 UTC, committed by Gabor Csardi on 05 October 2012, 00:00:00 UTC
1 parent cb8a32f
configure.ac
AC_INIT([RandomFields], 1.3) dnl package name, version
: ${R_HOME=`R RHOME`}
if test -z "${R_HOME}"; then
echo "could not determine R_HOME"
exit 1
fi
CC=`"${R_HOME}/bin/R" CMD config CC`
CFLAGS=`"${R_HOME}/bin/R" CMD config CFLAGS`
GMRF_EXT_lib_path="/usr/lib"
GMRF_lib_path="/usr/local/lib"
#
HAVE_GMRF="" ## HAVE_GMRF undefined
AC_ARG_ENABLE(GMRF, [ --enable-GMRF include the GMRF method by Havard Rue],
[AC_ARG_WITH([GMRF-lib],
AC_HELP_STRING([--with-GMRF-lib=LIB_PATH],
[the location of GMRF libraries]),
[GMRF_lib_path=$withval])
AC_CHECK_HEADERS(GMRFLib/GMRFLib.h)
if test "${ac_cv_header_GMRFLib_h}" = no; then
AC_MSG_ERROR(["GMRF headers GMRFLib.h not found"])
fi
AC_ARG_WITH([GMRF-EXT-lib],
AC_HELP_STRING([--with-GMRF-EXT-lib=LIB_PATH],
[the location of external GMRF libraries]),
[GMRF_EXT_lib_path=$withval])
AC_SUBST([LIBS],["-L${GMRF_lib_path}"])
AC_CHECK_LIB(GMRFLib, GMRFLib_set_error_handler_off, [],
[AC_MSG_ERROR("GMRFLib library not found on ${GMRF_lib_path} ")])
AC_CHECK_LIB(GMRFLib-geo, main, [],
[AC_MSG_ERROR("GMRFLib-geo library not found on ${GMRF_lib_path} ")])
AC_SUBST([LIBS],[" -L${GMRF_EXT_lib_path} ${LIBS}"])
# AC_CHECK_LIB(lapack, main, ,
# [AC_MSG_ERROR("lapack library not found on ${GMRF_EXT_lib_path} -- include from GMRFLib/EXTLIBS")])
AC_SUBST([LIBS], [" -llapack ${LIBS}"])
AC_CHECK_LIB(metis, main, ,
[AC_MSG_ERROR("metis library not found on ${GMRF_EXT_lib_path} --include from GMRFLib/EXTLIBS")])
AC_CHECK_LIB(taucs, main, ,
[AC_MSG_ERROR("taucs library not found on ${GMRF_EXT_lib_path} -- include from GMRFLib/EXTLIBS")])
# AC_CHECK_LIB(blas, main, ,
# [AC_MSG_ERROR("blas library not found on ${GMRF_EXT_lib_path} -- inlcude from GMRFLib/EXTLIBS")])
AC_SUBST([LIBS], [" -lblas ${LIBS}"])
# AC_CHECK_LIB(z, main, ,
# [AC_MSG_ERROR("z library not found on ${GMRF_EXT_lib_path} -- include from GMRFLib/EXTLIBS")])
AC_SUBST([LIBS], [" -lz ${LIBS}"])
# AC_CHECK_LIB(gslcblas, main, ,
# [AC_MSG_ERROR("gslcblas library not found on ${GMRF_EXT_lib_path} -- include from GMRFLib/EXTLIBS")])
AC_SUBST([LIBS], [" -lgslcblas ${LIBS}"])
# AC_CHECK_LIB(gsl, gsl_version_, ,
# [AC_MSG_ERROR("gsl library not found on ${GMRF_EXT_lib_path} -- include from GMRFLib/EXTLIBS")])
AC_SUBST([LIBS], [" -lgsl ${LIBS}"])
HAVE_GMRF="#define INCLUDEMARKOV 1"
AC_SUBST([LIBS],[" -L${GMRF_lib_path} -lGMRFLib -lGMRFLib-geo -L/usr/lib -L${GMRF_EXT_lib_path} -lgsl -lgslcblas -lz -lblas -L${GMRF_EXT_lib_path} -ltaucs -lmetis -llapack"])
])
AC_SUBST(HAVE_GMRF)
AC_CONFIG_FILES([src/includeMarkov.h src/Makevars])
AC_OUTPUT
cat src/includeMarkov.h
cat src/Makevars
dnl AC_CHECK_LIB(foo, fun, [HAVE_FOO=TRUE], [HAVE_FOO=FALSE])
dnl AC_SUBST(HAVE_FOO)
dnl ......
dnl AC_CONFIG_FILES([foo.R])
dnl AC_OUTPUT
dnl
dnl in configure.ac (assuming Autoconf 2.50 or better).
dnl
dnl The definition of the respective R function in foo.R.in could be
dnl
dnl foo <- function(x) {
dnl if(!@HAVE_FOO@)
dnl stop("Sorry, library 'foo' is not available"))
dnl ...
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