Revision c2f28aaed97ab601d30035756a47535caaf5c634 authored by Eh Tan on 12 November 2007, 22:50:32 UTC, committed by Eh Tan on 12 November 2007, 22:50:32 UTC
svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk ........ r8278 | tan2 | 2007-11-12 14:38:36 -0800 (Mon, 12 Nov 2007) | 1 line Added mishing header file to the makefile, also avoided compiling unused code. ........ r8279 | tan2 | 2007-11-12 14:42:56 -0800 (Mon, 12 Nov 2007) | 1 line Updated the version number and file NEWS ........
1 parent 4cab4ca
autocombine.py
#!/usr/bin/env python
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#
#<LicenseText>
#
# CitcomS.py by Eh Tan, Eun-seo Choi, and Pururav Thoutireddy.
# Copyright (C) 2002-2005, California Institute of Technology.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
#</LicenseText>
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
'''Automatically find the input parameters from CitcomS input file and run
'batchcombine.py'
usage: autocombine.py machinefile inputfile step1 [step2 [...] ]
'''
# default values for CitcomS input
defaults = {'output_format': 'ascii',
'output_optional': 'surf,botm',
'buoy_type': 1,
'tracer_flavors': 2,
'nprocx': 1,
'nprocy': 1,
'nprocz': 1,
'nodex': 9,
'nodey': 9,
'nodez': 9}
def normalize_optional(output_optional):
fields = []
for opt in output_optional.split(','):
## remove the leading/trailing whitespaces
opt = opt.strip()
## retain fields that are node-based
if opt in ('pressure', 'stress', 'comp_nd'):
fields.append(opt)
return ','.join(fields)
if __name__ == '__main__':
import sys
import batchcombine as bc
if len(sys.argv) < 4:
print __doc__
sys.exit(1)
machinefile = sys.argv[1]
inputfile = sys.argv[2]
timesteps = [int(i) for i in sys.argv[3:]]
# parse input
from parser import Parser
parser = Parser(defaults)
parser.read(inputfile)
datadir = parser.getstr('datadir')
datafile = parser.getstr('datafile')
output_format = parser.getstr('output_format')
if output_format != 'ascii':
print "Error: don't know how to combine the output", \
"(output_format=%s)" % output_format
sys.exit(1)
output_optional = parser.getstr('output_optional')
optional_fields = normalize_optional(output_optional)
buoy_type = parser.getint('buoy_type')
nflavors = parser.getint('tracer_flavors')
if buoy_type == 0:
ncompositions = nflavors
elif buoy_type == 1:
ncompositions = nflavors - 1
else:
print "Error: don't know how to combine the output", \
"(buoy_type=%d)" % buoy_type
sys.exit(1)
nodex = parser.getint('nodex')
nodey = parser.getint('nodey')
nodez = parser.getint('nodez')
ncap = parser.getint('nproc_surf')
nprocx = parser.getint('nprocx')
nprocy = parser.getint('nprocy')
nprocz = parser.getint('nprocz')
totalnodes = nprocx * nprocy * nprocz * ncap
nodelist = bc.machinefile2nodelist(machinefile, totalnodes)
for timestep in timesteps:
# combining coord, velo, temp, and visc
bc.batchcombine(nodelist, datadir, datafile, timestep,
nodex, nodey, nodez,
ncap, nprocx, nprocy, nprocz,
'coord,velo,visc', 0)
# combining optional fields, if necessary
if optional_fields:
bc.batchcombine(nodelist, datadir, datafile, timestep,
nodex, nodey, nodez,
ncap, nprocx, nprocy, nprocz,
optional_fields, ncompositions)
# version
# $Id$
# End of file
![swh spinner](/static/img/swh-spinner.gif)
Computing file changes ...