Revision c2f5ae1aad3831db93d91c932c79387063e08d93 authored by Paul Hoffman on 04 September 2020, 20:04:01 UTC, committed by GitHub on 04 September 2020, 20:04:01 UTC
1 parent c680e35
RcppExports.R
# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
RunModularityClusteringCpp <- function(SNN, modularityFunction, resolution, algorithm, nRandomStarts, nIterations, randomSeed, printOutput, edgefilename) {
.Call('_Seurat_RunModularityClusteringCpp', PACKAGE = 'Seurat', SNN, modularityFunction, resolution, algorithm, nRandomStarts, nIterations, randomSeed, printOutput, edgefilename)
}
RunUMISampling <- function(data, sample_val, upsample = FALSE, display_progress = TRUE) {
.Call('_Seurat_RunUMISampling', PACKAGE = 'Seurat', data, sample_val, upsample, display_progress)
}
RunUMISamplingPerCell <- function(data, sample_val, upsample = FALSE, display_progress = TRUE) {
.Call('_Seurat_RunUMISamplingPerCell', PACKAGE = 'Seurat', data, sample_val, upsample, display_progress)
}
RowMergeMatrices <- function(mat1, mat2, mat1_rownames, mat2_rownames, all_rownames) {
.Call('_Seurat_RowMergeMatrices', PACKAGE = 'Seurat', mat1, mat2, mat1_rownames, mat2_rownames, all_rownames)
}
RowMergeMatricesList <- function(mat_list, mat_rownames, all_rownames) {
.Call('_Seurat_RowMergeMatricesList', PACKAGE = 'Seurat', mat_list, mat_rownames, all_rownames)
}
LogNorm <- function(data, scale_factor, display_progress = TRUE) {
.Call('_Seurat_LogNorm', PACKAGE = 'Seurat', data, scale_factor, display_progress)
}
Standardize <- function(mat, display_progress = TRUE) {
.Call('_Seurat_Standardize', PACKAGE = 'Seurat', mat, display_progress)
}
FastSparseRowScale <- function(mat, scale = TRUE, center = TRUE, scale_max = 10, display_progress = TRUE) {
.Call('_Seurat_FastSparseRowScale', PACKAGE = 'Seurat', mat, scale, center, scale_max, display_progress)
}
FastSparseRowScaleWithKnownStats <- function(mat, mu, sigma, scale = TRUE, center = TRUE, scale_max = 10, display_progress = TRUE) {
.Call('_Seurat_FastSparseRowScaleWithKnownStats', PACKAGE = 'Seurat', mat, mu, sigma, scale, center, scale_max, display_progress)
}
FastCov <- function(mat, center = TRUE) {
.Call('_Seurat_FastCov', PACKAGE = 'Seurat', mat, center)
}
FastCovMats <- function(mat1, mat2, center = TRUE) {
.Call('_Seurat_FastCovMats', PACKAGE = 'Seurat', mat1, mat2, center)
}
FastRBind <- function(mat1, mat2) {
.Call('_Seurat_FastRBind', PACKAGE = 'Seurat', mat1, mat2)
}
FastExpMean <- function(mat, display_progress) {
.Call('_Seurat_FastExpMean', PACKAGE = 'Seurat', mat, display_progress)
}
SparseRowVar2 <- function(mat, mu, display_progress) {
.Call('_Seurat_SparseRowVar2', PACKAGE = 'Seurat', mat, mu, display_progress)
}
SparseRowVarStd <- function(mat, mu, sd, vmax, display_progress) {
.Call('_Seurat_SparseRowVarStd', PACKAGE = 'Seurat', mat, mu, sd, vmax, display_progress)
}
FastLogVMR <- function(mat, display_progress) {
.Call('_Seurat_FastLogVMR', PACKAGE = 'Seurat', mat, display_progress)
}
RowVar <- function(x) {
.Call('_Seurat_RowVar', PACKAGE = 'Seurat', x)
}
SparseRowVar <- function(mat, display_progress) {
.Call('_Seurat_SparseRowVar', PACKAGE = 'Seurat', mat, display_progress)
}
ReplaceColsC <- function(mat, col_idx, replacement) {
.Call('_Seurat_ReplaceColsC', PACKAGE = 'Seurat', mat, col_idx, replacement)
}
GraphToNeighborHelper <- function(mat) {
.Call('_Seurat_GraphToNeighborHelper', PACKAGE = 'Seurat', mat)
}
FindWeightsC <- function(integration_matrix, cells2, distances, anchor_cells2, integration_matrix_rownames, cell_index, anchor_score, min_dist, sd, display_progress) {
.Call('_Seurat_FindWeightsC', PACKAGE = 'Seurat', integration_matrix, cells2, distances, anchor_cells2, integration_matrix_rownames, cell_index, anchor_score, min_dist, sd, display_progress)
}
IntegrateDataC <- function(integration_matrix, weights, expression_cells2) {
.Call('_Seurat_IntegrateDataC', PACKAGE = 'Seurat', integration_matrix, weights, expression_cells2)
}
ComputeSNN <- function(nn_ranked, prune) {
.Call('_Seurat_ComputeSNN', PACKAGE = 'Seurat', nn_ranked, prune)
}
WriteEdgeFile <- function(snn, filename, display_progress) {
invisible(.Call('_Seurat_WriteEdgeFile', PACKAGE = 'Seurat', snn, filename, display_progress))
}
DirectSNNToFile <- function(nn_ranked, prune, display_progress, filename) {
.Call('_Seurat_DirectSNNToFile', PACKAGE = 'Seurat', nn_ranked, prune, display_progress, filename)
}
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