| c3873d8 | jdaeth274 | 13 May 2021, 12:33:05 UTC | tweaking pbp blasting | 13 May 2021, 12:33:05 UTC |
| 0fa3af5 | jdaeth274 | 13 May 2021, 11:53:02 UTC | tweaking pbp blasting | 13 May 2021, 11:53:02 UTC |
| fde08ac | jdaeth274 | 13 May 2021, 11:34:08 UTC | tweaking pbp blasting | 13 May 2021, 11:34:08 UTC |
| 122ae58 | jdaeth274 | 13 May 2021, 11:33:08 UTC | tweaking pbp blasting | 13 May 2021, 11:33:08 UTC |
| 7e0f0c0 | jdaeth274 | 13 May 2021, 11:31:30 UTC | tweaking pbp blasting | 13 May 2021, 11:31:30 UTC |
| 033a9da | jdaeth274 | 13 May 2021, 11:26:33 UTC | tweaking pbp blasting | 13 May 2021, 11:26:33 UTC |
| b2057e0 | jdaeth274 | 04 May 2021, 15:36:28 UTC | testing out the insert 257 lib hits | 04 May 2021, 15:36:28 UTC |
| bf3b706 | jdaeth274 | 04 May 2021, 15:14:24 UTC | testing out the insert 257 lib hits | 04 May 2021, 15:14:24 UTC |
| 06f8cfe | jdaeth274 | 28 April 2021, 16:15:29 UTC | retweaking recombination lengths | 28 April 2021, 16:15:29 UTC |
| 1e933db | jdaeth274 | 27 April 2021, 20:43:34 UTC | resetting the bash script | 27 April 2021, 20:43:34 UTC |
| 3c44cb2 | jdaeth274 | 27 April 2021, 17:36:12 UTC | debugging gpsc 1 results | 27 April 2021, 17:36:12 UTC |
| f3d4983 | jdaeth274 | 27 April 2021, 17:34:47 UTC | debugging gpsc 1 results | 27 April 2021, 17:34:47 UTC |
| aed1c20 | jdaeth274 | 27 April 2021, 17:23:11 UTC | debugging gpsc 1 results | 27 April 2021, 17:23:11 UTC |
| 1c572f0 | jdaeth274 | 27 April 2021, 17:14:44 UTC | debugging gpsc 1 results | 27 April 2021, 17:14:44 UTC |
| b67d0bd | jdaeth274 | 26 April 2021, 15:09:09 UTC | testing out where the missing isolates are coming from | 26 April 2021, 15:09:09 UTC |
| cf39c06 | jdaeth274 | 26 April 2021, 12:48:56 UTC | testing out where the missing isolates are coming from | 26 April 2021, 12:48:56 UTC |
| a01d407 | jdaeth274 | 26 April 2021, 10:48:17 UTC | testing out where the missing isolates are coming from | 26 April 2021, 10:48:17 UTC |
| 52f0f2e | jdaeth274 | 26 April 2021, 10:34:05 UTC | testing out where the missing isolates are coming from | 26 April 2021, 10:34:05 UTC |
| 8e893be | jdaeth274 | 26 April 2021, 10:25:22 UTC | testing out where the missing isolates are coming from | 26 April 2021, 10:25:22 UTC |
| 9c7ef1b | jdaeth274 | 23 April 2021, 14:21:17 UTC | shifting to fastas within output dir | 23 April 2021, 14:21:17 UTC |
| b3818b0 | jdaeth274 | 22 April 2021, 15:35:50 UTC | tweaking blast hits to allow for act compo location | 22 April 2021, 15:35:50 UTC |
| 2a84c47 | jdaeth274 | 21 April 2021, 15:25:39 UTC | allowing for different act compo directories | 21 April 2021, 15:25:39 UTC |
| 864b1b5 | jdaeth274 | 21 April 2021, 10:31:00 UTC | debugging missing hits | 21 April 2021, 10:31:00 UTC |
| 0eb0dc0 | jdaeth274 | 21 April 2021, 10:26:37 UTC | debugging missing hits | 21 April 2021, 10:26:37 UTC |
| caf753e | jdaeth274 | 21 April 2021, 10:16:35 UTC | debugging missing hits | 21 April 2021, 10:16:35 UTC |
| dee2d5f | jdaeth274 | 21 April 2021, 10:15:17 UTC | debugging missing hits | 21 April 2021, 10:15:17 UTC |
| d0ecc4b | jdaeth274 | 20 April 2021, 13:58:14 UTC | allowing fasta hits across different contigs in references | 20 April 2021, 13:58:14 UTC |
| 2231d81 | jdaeth274 | 20 April 2021, 10:49:44 UTC | tweaking hit allocator to allow NONE named genes in fasta search | 20 April 2021, 10:49:44 UTC |
| 3bd5415 | jdaeth274 | 20 April 2021, 09:00:33 UTC | removing none condition in gene name and updating missing errors | 20 April 2021, 09:00:33 UTC |
| 9693e8f | jdaeth274 | 19 April 2021, 18:47:09 UTC | updating library_script for inspect module | 19 April 2021, 18:47:09 UTC |
| ab23adf | jdaeth274 | 19 April 2021, 17:35:36 UTC | updating library_script for inspect module | 19 April 2021, 17:35:36 UTC |
| bb0e580 | jdaeth274 | 19 April 2021, 16:55:53 UTC | updating library_script for inspect module | 19 April 2021, 16:55:53 UTC |
| e9c51ea | jdaeth274 | 19 April 2021, 16:41:52 UTC | updating library_script for inspect module | 19 April 2021, 16:41:52 UTC |
| 6dcdded | jdaeth274 | 19 April 2021, 16:20:08 UTC | updating library_script for inspect module | 19 April 2021, 16:20:08 UTC |
| 240eb08 | jdaeth274 | 19 April 2021, 16:17:56 UTC | tweaking the hit and lib scripts for pmen reference runs | 19 April 2021, 16:17:56 UTC |
| 11211e0 | jdaeth274 | 19 April 2021, 15:00:31 UTC | updating library_script for inspect module | 19 April 2021, 15:00:31 UTC |
| d6bcc13 | jdaeth274 | 19 April 2021, 13:51:35 UTC | updating library_script | 19 April 2021, 13:51:35 UTC |
| 583cc1b | jdaeth274 | 19 April 2021, 11:19:01 UTC | updating lib to allow for global searching of pmen3 reference against lineages | 19 April 2021, 11:19:01 UTC |
| f015c45 | jdaeth274 | 19 April 2021, 10:45:48 UTC | updating lib to allow for global searching of pmen3 reference against lineages | 19 April 2021, 10:45:48 UTC |
| eaecd4f | jdaeth274 | 13 April 2021, 18:23:55 UTC | adding in the fasta searching, merging isolates, beginning pmen3 reference | 13 April 2021, 18:23:55 UTC |
| 31c9a97 | jdaeth274 | 02 March 2021, 17:23:41 UTC | adding in merging searching | 02 March 2021, 17:23:41 UTC |
| b8dcc89 | jdaeth274 | 15 February 2021, 16:02:09 UTC | adding in cps loci switch analysis | 15 February 2021, 16:02:09 UTC |
| afa53b6 | jdaeth274 | 13 January 2021, 10:39:55 UTC | tweaking analysis scripts | 13 January 2021, 10:39:55 UTC |
| 97cf0d7 | jdaeth274 | 09 January 2021, 17:49:40 UTC | tweaking the pbp reccy finder | 09 January 2021, 17:49:40 UTC |
| 31e7e72 | jdaeth274 | 08 January 2021, 20:10:04 UTC | tweaking pbp reccy finder to avoid stasis | 08 January 2021, 20:10:04 UTC |
| 2a067ae | jdaeth274 | 05 January 2021, 17:42:41 UTC | tweaking pbp python | 05 January 2021, 17:42:41 UTC |
| 8531860 | jdaeth274 | 05 January 2021, 17:41:12 UTC | tweaking pbp python | 05 January 2021, 17:41:12 UTC |
| 9ba3a22 | jdaeth274 | 05 January 2021, 17:25:10 UTC | tweaking pbp python | 05 January 2021, 17:25:10 UTC |
| 4e97ff5 | jdaeth274 | 05 January 2021, 17:11:39 UTC | tweaking pbp python | 05 January 2021, 17:11:39 UTC |
| 043ce38 | jdaeth274 | 05 January 2021, 16:15:29 UTC | tweaking pbp python | 05 January 2021, 16:15:29 UTC |
| 6d859f7 | jdaeth274 | 05 January 2021, 16:10:58 UTC | tweaking pbp python | 05 January 2021, 16:10:58 UTC |
| 9db5cc0 | jdaeth274 | 05 January 2021, 16:02:27 UTC | tweaking pbp python | 05 January 2021, 16:02:27 UTC |
| b805036 | jdaeth274 | 05 January 2021, 15:01:15 UTC | tweaking blast hits | 05 January 2021, 15:01:15 UTC |
| 334b3aa | jdaeth274 | 05 January 2021, 14:57:11 UTC | tweaking to JOINT arc pastml | 05 January 2021, 14:57:11 UTC |
| 809a7e7 | jdaeth274 | 03 January 2021, 15:51:01 UTC | tweaking python pbp | 03 January 2021, 15:51:01 UTC |
| 502a68f | jdaeth274 | 03 January 2021, 15:49:26 UTC | tweaking python pbp | 03 January 2021, 15:49:26 UTC |
| ba57e02 | jdaeth274 | 03 January 2021, 15:48:52 UTC | tweaking python pbp | 03 January 2021, 15:48:52 UTC |
| 45fcc15 | jdaeth274 | 03 January 2021, 15:47:21 UTC | tweaking python pbp | 03 January 2021, 15:47:21 UTC |
| b1344f6 | jdaeth274 | 03 January 2021, 13:05:19 UTC | tweaking python | 03 January 2021, 13:05:19 UTC |
| 976d06e | jdaeth274 | 03 January 2021, 13:01:18 UTC | tweaking python | 03 January 2021, 13:01:18 UTC |
| e831b3b | jdaeth274 | 03 January 2021, 12:55:22 UTC | tweaking python | 03 January 2021, 12:55:22 UTC |
| 8043b0b | jdaeth274 | 03 January 2021, 12:52:14 UTC | tweaking python | 03 January 2021, 12:52:14 UTC |
| 1cc6749 | jdaeth274 | 03 January 2021, 11:36:13 UTC | tweaking python | 03 January 2021, 11:36:13 UTC |
| 3c84179 | jdaeth274 | 03 January 2021, 11:34:59 UTC | tweaking python | 03 January 2021, 11:34:59 UTC |
| 9f1d2b1 | jdaeth274 | 03 January 2021, 11:29:13 UTC | tweaking python | 03 January 2021, 11:29:13 UTC |
| aa1d484 | jdaeth274 | 03 January 2021, 11:25:27 UTC | tweaking python | 03 January 2021, 11:25:27 UTC |
| 0fcbdb1 | jdaeth274 | 03 January 2021, 11:20:54 UTC | tweaking python | 03 January 2021, 11:20:54 UTC |
| 41281c7 | jdaeth274 | 03 January 2021, 10:50:14 UTC | tweaking python | 03 January 2021, 10:50:14 UTC |
| bd585db | jdaeth274 | 02 January 2021, 23:40:08 UTC | tweaking python | 02 January 2021, 23:40:08 UTC |
| 3716a64 | jdaeth274 | 02 January 2021, 21:56:30 UTC | tweaking node balance python | 02 January 2021, 21:56:30 UTC |
| 1918568 | jdaeth274 | 02 January 2021, 20:32:42 UTC | Merge branch 'master' of https://github.com/jdaeth274/ISA | 02 January 2021, 20:32:42 UTC |
| 1f9e3d5 | jdaeth274 | 02 January 2021, 20:31:26 UTC | tweaking python pbp | 02 January 2021, 20:31:26 UTC |
| 2f9fac2 | jdaeth274 | 02 January 2021, 19:48:12 UTC | tweaking pbs | 02 January 2021, 19:48:12 UTC |
| bec8aa7 | jdaeth274 | 02 January 2021, 18:53:48 UTC | tweaking the pbp pipeline for dealing with missing data | 02 January 2021, 18:53:48 UTC |
| a13d08f | jdaeth274 | 30 December 2020, 16:26:32 UTC | updating pbp pipeline | 30 December 2020, 16:26:32 UTC |
| 2723b71 | jdaeth274 | 04 December 2020, 12:01:07 UTC | adding in pbp recombination scripts | 04 December 2020, 12:01:07 UTC |
| c55f9ad | jdaeth274 | 25 November 2020, 18:00:52 UTC | adding in the library changes | 25 November 2020, 18:00:52 UTC |
| 9cf8668 | jdaeth274 | 25 November 2020, 17:55:18 UTC | adding in the library changes | 25 November 2020, 17:55:18 UTC |
| cbe0028 | jdaeth274 | 25 November 2020, 17:29:12 UTC | adding in the library changes | 25 November 2020, 17:29:12 UTC |
| 0a8d99b | jdaeth274 | 25 November 2020, 17:23:58 UTC | adding in the library changes | 25 November 2020, 17:23:58 UTC |
| 93d9f2c | jdaeth274 | 25 November 2020, 16:55:09 UTC | tweaking lib creator | 25 November 2020, 16:55:09 UTC |
| 41d5627 | jdaeth274 | 13 November 2020, 15:47:23 UTC | improving flank extraction time | 13 November 2020, 15:47:23 UTC |
| dd08dc8 | jdaeth274 | 13 November 2020, 14:42:11 UTC | tweaking local interpreter | 13 November 2020, 14:42:11 UTC |
| 458c6fb | jdaeth274 | 13 November 2020, 12:36:05 UTC | tweaking blast hits | 13 November 2020, 12:36:05 UTC |
| cf59eb9 | jdaeth274 | 13 November 2020, 12:34:13 UTC | tweaking blast hits | 13 November 2020, 12:34:13 UTC |
| c750a9a | jdaeth274 | 13 November 2020, 12:21:27 UTC | tweaking blast hits | 13 November 2020, 12:21:27 UTC |
| 13ea713 | jdaeth274 | 12 November 2020, 21:17:58 UTC | tweaking plots | 12 November 2020, 21:17:58 UTC |
| 6ec4fe8 | jdaeth274 | 12 November 2020, 21:12:47 UTC | tweaking plots | 12 November 2020, 21:12:47 UTC |
| d9c4799 | jdaeth274 | 12 November 2020, 20:49:30 UTC | tweaking plots | 12 November 2020, 20:49:30 UTC |
| 55d1789 | jdaeth274 | 12 November 2020, 20:44:15 UTC | tweaking plots | 12 November 2020, 20:44:15 UTC |
| d0aec7c | jdaeth274 | 12 November 2020, 20:37:22 UTC | tweaking plotting | 12 November 2020, 20:37:22 UTC |
| 59cec22 | jdaeth274 | 12 November 2020, 20:34:14 UTC | tweaking plotting | 12 November 2020, 20:34:14 UTC |
| bdc3e3d | jdaeth274 | 12 November 2020, 20:09:21 UTC | tweaking plotting | 12 November 2020, 20:09:21 UTC |
| c1f9159 | jdaeth274 | 12 November 2020, 19:58:29 UTC | updating R plotting | 12 November 2020, 19:58:29 UTC |
| 25f8d7a | jdaeth274 | 10 November 2020, 20:00:47 UTC | tweaking the external control isolate for the recombinations | 10 November 2020, 20:00:47 UTC |
| 18aceb4 | jdaeth274 | 10 November 2020, 10:00:11 UTC | tweaking blast hit extraction | 10 November 2020, 10:00:11 UTC |
| 30982b6 | jdaeth274 | 10 November 2020, 09:57:35 UTC | tweaking blast hit extraction | 10 November 2020, 09:57:35 UTC |
| 2a94b2f | jdaeth274 | 10 November 2020, 09:48:32 UTC | tweaking blast hit extraction | 10 November 2020, 09:48:32 UTC |
| d636ef0 | jdaeth274 | 10 November 2020, 09:44:44 UTC | tweaking blast hit extraction | 10 November 2020, 09:44:44 UTC |
| 7313e26 | jdaeth274 | 09 November 2020, 20:53:03 UTC | tweaking blast hits to work with altered refs | 09 November 2020, 20:53:03 UTC |
