We are hiring ! See our job offers.
https://github.com/jdaeth274/ISA

sort by:
Revision Author Date Message Commit Date
c3873d8 tweaking pbp blasting 13 May 2021, 12:33:05 UTC
0fa3af5 tweaking pbp blasting 13 May 2021, 11:53:02 UTC
fde08ac tweaking pbp blasting 13 May 2021, 11:34:08 UTC
122ae58 tweaking pbp blasting 13 May 2021, 11:33:08 UTC
7e0f0c0 tweaking pbp blasting 13 May 2021, 11:31:30 UTC
033a9da tweaking pbp blasting 13 May 2021, 11:26:33 UTC
b2057e0 testing out the insert 257 lib hits 04 May 2021, 15:36:28 UTC
bf3b706 testing out the insert 257 lib hits 04 May 2021, 15:14:24 UTC
06f8cfe retweaking recombination lengths 28 April 2021, 16:15:29 UTC
1e933db resetting the bash script 27 April 2021, 20:43:34 UTC
3c44cb2 debugging gpsc 1 results 27 April 2021, 17:36:12 UTC
f3d4983 debugging gpsc 1 results 27 April 2021, 17:34:47 UTC
aed1c20 debugging gpsc 1 results 27 April 2021, 17:23:11 UTC
1c572f0 debugging gpsc 1 results 27 April 2021, 17:14:44 UTC
b67d0bd testing out where the missing isolates are coming from 26 April 2021, 15:09:09 UTC
cf39c06 testing out where the missing isolates are coming from 26 April 2021, 12:48:56 UTC
a01d407 testing out where the missing isolates are coming from 26 April 2021, 10:48:17 UTC
52f0f2e testing out where the missing isolates are coming from 26 April 2021, 10:34:05 UTC
8e893be testing out where the missing isolates are coming from 26 April 2021, 10:25:22 UTC
9c7ef1b shifting to fastas within output dir 23 April 2021, 14:21:17 UTC
b3818b0 tweaking blast hits to allow for act compo location 22 April 2021, 15:35:50 UTC
2a84c47 allowing for different act compo directories 21 April 2021, 15:25:39 UTC
864b1b5 debugging missing hits 21 April 2021, 10:31:00 UTC
0eb0dc0 debugging missing hits 21 April 2021, 10:26:37 UTC
caf753e debugging missing hits 21 April 2021, 10:16:35 UTC
dee2d5f debugging missing hits 21 April 2021, 10:15:17 UTC
d0ecc4b allowing fasta hits across different contigs in references 20 April 2021, 13:58:14 UTC
2231d81 tweaking hit allocator to allow NONE named genes in fasta search 20 April 2021, 10:49:44 UTC
3bd5415 removing none condition in gene name and updating missing errors 20 April 2021, 09:00:33 UTC
9693e8f updating library_script for inspect module 19 April 2021, 18:47:09 UTC
ab23adf updating library_script for inspect module 19 April 2021, 17:35:36 UTC
bb0e580 updating library_script for inspect module 19 April 2021, 16:55:53 UTC
e9c51ea updating library_script for inspect module 19 April 2021, 16:41:52 UTC
6dcdded updating library_script for inspect module 19 April 2021, 16:20:08 UTC
240eb08 tweaking the hit and lib scripts for pmen reference runs 19 April 2021, 16:17:56 UTC
11211e0 updating library_script for inspect module 19 April 2021, 15:00:31 UTC
d6bcc13 updating library_script 19 April 2021, 13:51:35 UTC
583cc1b updating lib to allow for global searching of pmen3 reference against lineages 19 April 2021, 11:19:01 UTC
f015c45 updating lib to allow for global searching of pmen3 reference against lineages 19 April 2021, 10:45:48 UTC
eaecd4f adding in the fasta searching, merging isolates, beginning pmen3 reference 13 April 2021, 18:23:55 UTC
31c9a97 adding in merging searching 02 March 2021, 17:23:41 UTC
b8dcc89 adding in cps loci switch analysis 15 February 2021, 16:02:09 UTC
afa53b6 tweaking analysis scripts 13 January 2021, 10:39:55 UTC
97cf0d7 tweaking the pbp reccy finder 09 January 2021, 17:49:40 UTC
31e7e72 tweaking pbp reccy finder to avoid stasis 08 January 2021, 20:10:04 UTC
2a067ae tweaking pbp python 05 January 2021, 17:42:41 UTC
8531860 tweaking pbp python 05 January 2021, 17:41:12 UTC
9ba3a22 tweaking pbp python 05 January 2021, 17:25:10 UTC
4e97ff5 tweaking pbp python 05 January 2021, 17:11:39 UTC
043ce38 tweaking pbp python 05 January 2021, 16:15:29 UTC
6d859f7 tweaking pbp python 05 January 2021, 16:10:58 UTC
9db5cc0 tweaking pbp python 05 January 2021, 16:02:27 UTC
b805036 tweaking blast hits 05 January 2021, 15:01:15 UTC
334b3aa tweaking to JOINT arc pastml 05 January 2021, 14:57:11 UTC
809a7e7 tweaking python pbp 03 January 2021, 15:51:01 UTC
502a68f tweaking python pbp 03 January 2021, 15:49:26 UTC
ba57e02 tweaking python pbp 03 January 2021, 15:48:52 UTC
45fcc15 tweaking python pbp 03 January 2021, 15:47:21 UTC
b1344f6 tweaking python 03 January 2021, 13:05:19 UTC
976d06e tweaking python 03 January 2021, 13:01:18 UTC
e831b3b tweaking python 03 January 2021, 12:55:22 UTC
8043b0b tweaking python 03 January 2021, 12:52:14 UTC
1cc6749 tweaking python 03 January 2021, 11:36:13 UTC
3c84179 tweaking python 03 January 2021, 11:34:59 UTC
9f1d2b1 tweaking python 03 January 2021, 11:29:13 UTC
aa1d484 tweaking python 03 January 2021, 11:25:27 UTC
0fcbdb1 tweaking python 03 January 2021, 11:20:54 UTC
41281c7 tweaking python 03 January 2021, 10:50:14 UTC
bd585db tweaking python 02 January 2021, 23:40:08 UTC
3716a64 tweaking node balance python 02 January 2021, 21:56:30 UTC
1918568 Merge branch 'master' of https://github.com/jdaeth274/ISA 02 January 2021, 20:32:42 UTC
1f9e3d5 tweaking python pbp 02 January 2021, 20:31:26 UTC
2f9fac2 tweaking pbs 02 January 2021, 19:48:12 UTC
bec8aa7 tweaking the pbp pipeline for dealing with missing data 02 January 2021, 18:53:48 UTC
a13d08f updating pbp pipeline 30 December 2020, 16:26:32 UTC
2723b71 adding in pbp recombination scripts 04 December 2020, 12:01:07 UTC
c55f9ad adding in the library changes 25 November 2020, 18:00:52 UTC
9cf8668 adding in the library changes 25 November 2020, 17:55:18 UTC
cbe0028 adding in the library changes 25 November 2020, 17:29:12 UTC
0a8d99b adding in the library changes 25 November 2020, 17:23:58 UTC
93d9f2c tweaking lib creator 25 November 2020, 16:55:09 UTC
41d5627 improving flank extraction time 13 November 2020, 15:47:23 UTC
dd08dc8 tweaking local interpreter 13 November 2020, 14:42:11 UTC
458c6fb tweaking blast hits 13 November 2020, 12:36:05 UTC
cf59eb9 tweaking blast hits 13 November 2020, 12:34:13 UTC
c750a9a tweaking blast hits 13 November 2020, 12:21:27 UTC
13ea713 tweaking plots 12 November 2020, 21:17:58 UTC
6ec4fe8 tweaking plots 12 November 2020, 21:12:47 UTC
d9c4799 tweaking plots 12 November 2020, 20:49:30 UTC
55d1789 tweaking plots 12 November 2020, 20:44:15 UTC
d0aec7c tweaking plotting 12 November 2020, 20:37:22 UTC
59cec22 tweaking plotting 12 November 2020, 20:34:14 UTC
bdc3e3d tweaking plotting 12 November 2020, 20:09:21 UTC
c1f9159 updating R plotting 12 November 2020, 19:58:29 UTC
25f8d7a tweaking the external control isolate for the recombinations 10 November 2020, 20:00:47 UTC
18aceb4 tweaking blast hit extraction 10 November 2020, 10:00:11 UTC
30982b6 tweaking blast hit extraction 10 November 2020, 09:57:35 UTC
2a94b2f tweaking blast hit extraction 10 November 2020, 09:48:32 UTC
d636ef0 tweaking blast hit extraction 10 November 2020, 09:44:44 UTC
7313e26 tweaking blast hits to work with altered refs 09 November 2020, 20:53:03 UTC
back to top