Package: ape
Version: 3.0-5
Date: 2012-08-01
Title: Analyses of Phylogenetics and Evolution
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
        Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
        Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre
        Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer
        Opgen-Rhein, Andrei-Alin Popescu, Klaus Schliep, Korbinian
        Strimmer, Damien de Vienne
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Depends: R (>= 2.6.0)
Suggests: gee
Imports: gee, nlme, lattice
ZipData: no
Description: ape provides functions for reading, writing, plotting, and
        manipulating phylogenetic trees, analyses of comparative data
        in a phylogenetic framework, ancestral character analyses,
        analyses of diversification and macroevolution, computing
        distances from allelic and nucleotide data, reading and writing
        nucleotide sequences, and several tools such as Mantel's test,
        minimum spanning tree, generalized skyline plots, graphical
        exploration of phylogenetic data (alex, trex, kronoviz),
        estimation of absolute evolutionary rates and clock-like trees
        using mean path lengths and penalized likelihood. Phylogeny
        estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and
        triangle methods, and several methods handling incomplete
        distance matrices (NJ*, BIONJ*, MVR*, and the corresponding
        triangle method). Some functions call external applications
        (PhyML, Clustal, T-Coffee, Muscle) whose results are returned
        into R.
License: GPL (>= 2)
URL: http://ape.mpl.ird.fr/
Packaged: 2012-08-01 11:30:14 UTC; paradis
Repository: CRAN
Date/Publication: 2012-08-02 09:41:47