Skip to main content
Revision c5b88eb5aa3fa9f6a657d8b078405ce82f7e0e2d authored by Eric Sanford on 09 October 2019, 20:53:45 UTC, committed by Eric Sanford on 09 October 2019, 20:53:45 UTC
Updated STAR version, set default reference genome to hg38, added gene_names from gtf file when there is no HGNC symbol match, made it easier to change the reference genome by defining it in the setEnvironmentVariables.sh script. Modified some snakemake files to make that alternate pipeline almost runnable on the cluster in an interactive node.
1 parent e650685
History
FileModeSize
envs
refs
rules
schemas
scripts
LICENSE -rw-r--r--1.0 KB
README.md -rw-r--r--4.1 KB
README.philupds.md -rw-r--r--296 bytes
Snakefile -rw-r--r--1.4 KB
Snakefile.orig -rw-r--r--1.3 KB
config.yaml -rw-r--r--1.1 KB
samples.example.tsv -rw-r--r--39 bytes
samples.tsv -rw-r--r--125 bytes
units.example.tsv -rw-r--r--105 bytes
units.tsv -rw-r--r--270 bytes

README.md

swh spinner

Loading README.md ...