| c94684a | Alexander Lalejini | 29 June 2022, 17:30:58 UTC | add sample size section to supplemental toc | 29 June 2022, 17:30:58 UTC |
| 1e1e03f | Alexander Lalejini | 29 June 2022, 16:49:30 UTC | update packages bib file | 29 June 2022, 16:49:30 UTC |
| a0899ad | Alexander Lalejini | 29 June 2022, 16:43:40 UTC | fix color palette switch | 29 June 2022, 16:43:40 UTC |
| 4e43cc5 | Alexander Lalejini | 29 June 2022, 16:14:36 UTC | switch color palette, clean up figures in 2021-09-30 | 29 June 2022, 16:14:36 UTC |
| 8081a91 | Alexander Lalejini | 29 June 2022, 16:10:05 UTC | update color palette, clean up figures in 2021-11-08 | 29 June 2022, 16:10:05 UTC |
| b0bd2d2 | Alexander Lalejini | 29 June 2022, 15:58:55 UTC | clean up color palettes in 2021-11-12 | 29 June 2022, 15:58:55 UTC |
| fc88920 | Alexander Lalejini | 29 June 2022, 15:53:28 UTC | add missing khroma package | 29 June 2022, 15:53:28 UTC |
| ee91c37 | Alexander Lalejini | 29 June 2022, 15:48:22 UTC | add khroma package to dockerfile | 29 June 2022, 15:48:22 UTC |
| 4323176 | Alexander Lalejini | 29 June 2022, 15:47:57 UTC | add missing khroma package | 29 June 2022, 15:47:57 UTC |
| dd0e5c0 | Alexander Lalejini | 29 June 2022, 15:47:42 UTC | swap color palettes | 29 June 2022, 15:47:42 UTC |
| 22b0cd6 | Alexander Lalejini | 29 June 2022, 15:41:39 UTC | swap color schemes | 29 June 2022, 15:41:39 UTC |
| eda4a49 | Alexander Lalejini | 29 June 2022, 15:37:31 UTC | swap color schemes | 29 June 2022, 15:37:31 UTC |
| dc9ecfc | Alexander Lalejini | 29 June 2022, 15:16:41 UTC | switch to more accessible color palette for 2021-11-15-ec | 29 June 2022, 15:16:41 UTC |
| 5e5c52f | Alexander Lalejini | 29 June 2022, 15:15:55 UTC | ignore local plots directory | 29 June 2022, 15:15:55 UTC |
| 29d9b88 | Alexander Lalejini | 28 June 2022, 00:08:17 UTC | add 2021-09-30-sample-size experiment to bookdown build | 28 June 2022, 00:08:17 UTC |
| 7feab54 | Alexander Lalejini | 28 June 2022, 00:07:54 UTC | add missing ref to gh repo archive to the supplemental bib | 28 June 2022, 00:07:54 UTC |
| 4433fd0 | Alexander Lalejini | 28 June 2022, 00:07:04 UTC | add 2021-09-30 exp data download to dockerfile | 28 June 2022, 00:07:04 UTC |
| da3a77e | Alexander Lalejini | 28 June 2022, 00:05:50 UTC | clean up 2021-09-30 rmd doc | 28 June 2022, 00:05:50 UTC |
| 9aacb5f | Alexander Lalejini | 28 June 2022, 00:05:21 UTC | lower resolution on supplemental material time series graphs to improve bookdown compile time | 28 June 2022, 00:05:21 UTC |
| 40c7e02 | Alexander Lalejini | 27 June 2022, 23:40:19 UTC | add graphs zooming in on early part of runs | 27 June 2022, 23:40:19 UTC |
| a93b87b | Alexander Lalejini | 24 June 2022, 14:43:16 UTC | add script to backfill epoch 0 data, draft updated manuscript figure | 24 June 2022, 14:43:16 UTC |
| a8b3bd4 | Alexander Lalejini | 24 June 2022, 13:56:47 UTC | update manuscript figures for 2021-11-11-selection, add script to backfill epoch 0 of time series data | 24 June 2022, 13:56:47 UTC |
| ac2fd0d | Alexander Lalejini | 24 June 2022, 01:08:18 UTC | add script to fill time series after solutions evolve, update figures in 2021-11-15-ec | 24 June 2022, 01:08:18 UTC |
| 420d470 | Alexander Lalejini | 31 March 2022, 20:43:29 UTC | fix cookie cutter credits | 31 March 2022, 20:43:29 UTC |
| 08fe942 | Alexander Lalejini | 31 March 2022, 20:41:34 UTC | add zenodo doi badge to readme | 31 March 2022, 20:41:34 UTC |
| 2344abc | Alexander Lalejini | 31 March 2022, 20:41:09 UTC | add citation file | 31 March 2022, 20:41:09 UTC |
| 9dad09d | Alexander Lalejini | 31 March 2022, 20:21:41 UTC | tweak styling on badge | 31 March 2022, 20:21:41 UTC |
| 6e1af53 | Alexander Lalejini | 31 March 2022, 20:20:27 UTC | clean up root readme | 31 March 2022, 20:20:27 UTC |
| 4cf0d9d | Alexander Lalejini | 31 March 2022, 19:58:14 UTC | draft supplement introduction | 31 March 2022, 19:58:14 UTC |
| 5bd7591 | Alexander Lalejini | 31 March 2022, 19:58:03 UTC | tweak analysis heading | 31 March 2022, 19:58:03 UTC |
| b0b92df | Alexander Lalejini | 31 March 2022, 18:35:12 UTC | update supplement packages bib | 31 March 2022, 18:35:12 UTC |
| c4a4480 | Alexander Lalejini | 31 March 2022, 18:33:42 UTC | add 2021-11-08 exp to supplement build | 31 March 2022, 18:33:42 UTC |
| d69ed25 | Alexander Lalejini | 31 March 2022, 17:48:27 UTC | add 2021-11-12 exp to bookdown build | 31 March 2022, 17:48:27 UTC |
| 36f6ced | Alexander Lalejini | 31 March 2022, 17:27:01 UTC | add time and pop exp data to dockerfile | 31 March 2022, 17:27:01 UTC |
| 7903085 | Alexander Lalejini | 31 March 2022, 17:23:58 UTC | ignore old data | 31 March 2022, 17:23:58 UTC |
| be4c591 | Alexander Lalejini | 31 March 2022, 17:11:39 UTC | add example metapopulation profiles to supplement | 31 March 2022, 17:11:39 UTC |
| fb9ea9a | Alexander Lalejini | 31 March 2022, 17:08:59 UTC | add example metapop profiles | 31 March 2022, 17:08:59 UTC |
| 6fc6868 | Alexander Lalejini | 31 March 2022, 16:54:23 UTC | fix plot limit | 31 March 2022, 16:54:23 UTC |
| 5deefa4 | Alexander Lalejini | 31 March 2022, 16:50:20 UTC | add 2021-11-30 experiment analyses to supplement build | 31 March 2022, 16:50:20 UTC |
| c52148f | Alexander Lalejini | 31 March 2022, 16:22:51 UTC | add 2021-11-11 to supplement | 31 March 2022, 16:22:51 UTC |
| 359b4a0 | Alexander Lalejini | 31 March 2022, 15:55:41 UTC | fix script name in dockerfile | 31 March 2022, 15:55:41 UTC |
| d992f54 | Alexander Lalejini | 31 March 2022, 15:22:51 UTC | ignore bookdown files | 31 March 2022, 15:22:51 UTC |
| 737da6c | Alexander Lalejini | 31 March 2022, 15:21:59 UTC | add 2021-11-15 ec data download to dockerfile | 31 March 2022, 15:21:59 UTC |
| 654888c | Alexander Lalejini | 31 March 2022, 15:19:45 UTC | add download data script | 31 March 2022, 15:19:45 UTC |
| dc47236 | Alexander Lalejini | 31 March 2022, 15:17:40 UTC | fix build book path in dockerfile | 31 March 2022, 15:17:40 UTC |
| 36fea5f | Alexander Lalejini | 31 March 2022, 15:15:30 UTC | update bib files, references | 31 March 2022, 15:15:30 UTC |
| 4cdc8e1 | Alexander Lalejini | 31 March 2022, 15:09:05 UTC | add gp experiment to supplement | 31 March 2022, 15:09:05 UTC |
| a85a617 | Alexander Lalejini | 31 March 2022, 14:46:13 UTC | add dockerignore file | 31 March 2022, 14:46:13 UTC |
| fae09ee | Alexander Lalejini | 31 March 2022, 14:40:32 UTC | add bookdown build to dockerfile + deploy supplement workflow | 31 March 2022, 14:40:32 UTC |
| cf58756 | Alexander Lalejini | 31 March 2022, 14:35:59 UTC | minimal bookdown compilation working | 31 March 2022, 14:35:59 UTC |
| 094827e | Alexander Lalejini | 31 March 2022, 14:09:12 UTC | clean up unused files and make targets | 31 March 2022, 14:09:12 UTC |
| 00ebdde | Alexander Lalejini | 31 March 2022, 01:38:05 UTC | add run with docker instructions | 31 March 2022, 01:38:05 UTC |
| ec2336d | Alexander Lalejini | 31 March 2022, 00:31:04 UTC | get docker image building | 31 March 2022, 00:31:04 UTC |
| d43575a | Alexander Lalejini | 30 March 2022, 23:24:27 UTC | add experiment build script | 30 March 2022, 23:24:27 UTC |
| 619ad41 | Alexander Lalejini | 30 March 2022, 22:15:52 UTC | start drafting docs for running experiments, add r to dockerfile | 30 March 2022, 22:15:52 UTC |
| 8655404 | Alexander Lalejini | 30 March 2022, 21:30:24 UTC | draft data, software, and digital organism docs | 30 March 2022, 21:30:24 UTC |
| 9f1594d | Alexander Lalejini | 30 March 2022, 20:17:37 UTC | update test includes to work with previous changes to include directory structure | 30 March 2022, 20:17:37 UTC |
| 8cead95 | Alexander Lalejini | 30 March 2022, 19:57:29 UTC | ignore executables, add debug cruft to make clean | 30 March 2022, 19:57:29 UTC |
| 337ada5 | Alexander Lalejini | 30 March 2022, 19:44:01 UTC | specify commit hash for Empirical submodule | 30 March 2022, 19:44:01 UTC |
| 925dbec | Alexander Lalejini | 30 March 2022, 19:28:28 UTC | clean up 2021-11-16 readme | 30 March 2022, 19:28:28 UTC |
| 8b97084 | Alexander Lalejini | 30 March 2022, 19:27:48 UTC | update r markdown analyses | 30 March 2022, 19:27:48 UTC |
| 626ea9e | Alexander Lalejini | 30 March 2022, 19:23:34 UTC | update 2021-11-12 r markdown doc | 30 March 2022, 19:23:34 UTC |
| 30c5edf | Alexander Lalejini | 30 March 2022, 19:23:07 UTC | clean up 2021-11-12 exp readme | 30 March 2022, 19:23:07 UTC |
| fb06eb4 | Alexander Lalejini | 30 March 2022, 19:20:54 UTC | update 2021-11-08 R visualizations | 30 March 2022, 19:20:54 UTC |
| eeac66b | Alexander Lalejini | 30 March 2022, 19:19:57 UTC | commit tweaked sub script | 30 March 2022, 19:19:57 UTC |
| d896558 | Alexander Lalejini | 30 March 2022, 19:17:41 UTC | ignore plot and test directories in experiment analyses | 30 March 2022, 19:17:41 UTC |
| 329744c | Alexander Lalejini | 30 March 2022, 19:13:05 UTC | update 2021-09-22 hpcc test readme | 30 March 2022, 19:13:05 UTC |
| 4c3fb28 | Alexander Lalejini | 30 March 2022, 17:57:02 UTC | ignore max coverage executable | 30 March 2022, 17:57:02 UTC |
| 4906de1 | Alexander Lalejini | 30 March 2022, 17:56:32 UTC | rm old contact in code of conduct | 30 March 2022, 17:56:32 UTC |
| eb4fde4 | Alexander Lalejini | 30 March 2022, 17:55:51 UTC | remove unused files from original cookie cutter template | 30 March 2022, 17:55:58 UTC |
| 3814e76 | Alexander Lalejini | 30 March 2022, 17:45:14 UTC | remove unused ci scripts | 30 March 2022, 17:45:14 UTC |
| 1f20acb | Alexander Lalejini | 30 March 2022, 17:44:37 UTC | remove ci jobs from actions | 30 March 2022, 17:44:37 UTC |
| aa5ce55 | Alexander Lalejini | 30 March 2022, 17:39:17 UTC | ignore vscode cfg | 30 March 2022, 17:39:17 UTC |
| 6b56434 | Alexander Lalejini | 30 March 2022, 17:36:59 UTC | Add comments to Makefile for choosing experiment setup to compile | 30 March 2022, 17:37:17 UTC |
| 401125c | Alexander Lalejini | 30 March 2022, 17:36:18 UTC | remove local notes | 30 March 2022, 17:36:18 UTC |
| 60527c8 | Alexander Lalejini | 30 March 2022, 17:35:52 UTC | Ignore local files | 30 March 2022, 17:35:52 UTC |
| c4cd5b1 | Alexander Lalejini | 05 January 2022, 21:17:02 UTC | clean up 2021-11-30 rmd analysis | 05 January 2022, 21:17:02 UTC |
| eb19ea9 | Alexander Lalejini | 05 January 2022, 18:13:23 UTC | update 2021-11-11 rmd analysis | 05 January 2022, 18:13:23 UTC |
| 499ea0e | Alexander Lalejini | 05 January 2022, 01:11:41 UTC | ignore tar files | 05 January 2022, 01:11:41 UTC |
| 2d8d223 | Alexander Lalejini | 16 December 2021, 20:11:59 UTC | tweak num elites in aggregate script | 16 December 2021, 20:11:59 UTC |
| 380ea41 | Alexander Lalejini | 16 December 2021, 19:41:17 UTC | change elite-10 num elites for ec exp | 16 December 2021, 19:41:17 UTC |
| b5f2580 | Alexander Lalejini | 16 December 2021, 15:53:26 UTC | patch in elite-10 treatment into aggregate script | 16 December 2021, 15:53:26 UTC |
| 0bc23b4 | Alexander Lalejini | 16 December 2021, 01:10:49 UTC | add elite 10 runs to 2021-11-30 job sub | 16 December 2021, 01:10:49 UTC |
| b91c0ea | Alexander Lalejini | 16 December 2021, 01:03:39 UTC | patch in elite-10 selection in ec aggregate script | 16 December 2021, 01:03:39 UTC |
| ea3f6a4 | Alexander Lalejini | 14 December 2021, 20:29:23 UTC | Patch elite selection in ec code | 14 December 2021, 20:29:23 UTC |
| e200d5b | Alexander Lalejini | 14 December 2021, 20:01:30 UTC | add elite 10 selection scheme to ec runs | 14 December 2021, 20:01:30 UTC |
| b5c1e28 | Alexander Lalejini | 14 December 2021, 18:26:25 UTC | patch aggregate script | 14 December 2021, 18:26:25 UTC |
| a1289eb | Alexander Lalejini | 14 December 2021, 18:03:22 UTC | collect elite-10 data | 14 December 2021, 18:03:22 UTC |
| e76bedc | Alexander Lalejini | 02 December 2021, 17:15:20 UTC | add data aggregation scripts for 2021-11-30 experiment | 02 December 2021, 17:15:20 UTC |
| af64855 | Alexander Lalejini | 02 December 2021, 17:08:17 UTC | update 2021-11 experiment Rmd documents | 02 December 2021, 17:08:17 UTC |
| a3909df | Alexander Lalejini | 02 December 2021, 02:12:15 UTC | update max coverage solver | 02 December 2021, 02:12:15 UTC |
| c50b3a7 | Alexander Lalejini | 02 December 2021, 01:05:20 UTC | add program to compute max coverage for each population count | 02 December 2021, 01:05:20 UTC |
| 043eea2 | Alexander Lalejini | 30 November 2021, 21:20:58 UTC | draft job scripts for 2021-11-30 aligned tasks experiment | 30 November 2021, 21:20:58 UTC |
| a4562b5 | Alexander Lalejini | 29 November 2021, 18:05:35 UTC | fixing output skipping | 29 November 2021, 18:05:35 UTC |
| eb3ed2e | Alexander Lalejini | 29 November 2021, 18:00:28 UTC | update job sub script for data agg | 29 November 2021, 18:00:28 UTC |
| 7c3fc72 | Alexander Lalejini | 29 November 2021, 18:00:03 UTC | update job sub script for data agg | 29 November 2021, 18:00:03 UTC |
| 8657983 | Alexander Lalejini | 29 November 2021, 17:58:39 UTC | fix skip output functionality | 29 November 2021, 17:58:39 UTC |
| f84170a | Alexander Lalejini | 19 November 2021, 20:35:57 UTC | add data aggregation job sub script | 19 November 2021, 20:35:57 UTC |
| 170668c | Alexander Lalejini | 19 November 2021, 20:27:50 UTC | draft 2021-11-16 data aggregation script | 19 November 2021, 20:27:50 UTC |
| e666cdf | Alexander Lalejini | 17 November 2021, 00:14:47 UTC | updates to r markdown analysis documents | 17 November 2021, 00:14:47 UTC |
