Revision ccfa49b8f4e68af585082fa3d748424fd39c8d6e authored by Jesper Nielsen on 29 November 2021, 10:12:39 UTC, committed by GitHub on 29 November 2021, 10:12:39 UTC
Fix broken CircleCi build.
1 parent d088c2c
convolutional.py
# Copyright 2017-2020 The GPflow Contributors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import numpy as np
import tensorflow as tf
from ..base import Parameter
from ..config import default_float
from ..utilities import to_default_float
from .base import Kernel
class Convolutional(Kernel):
r"""
Plain convolutional kernel as described in \citet{vdw2017convgp}. Defines
a GP f( ) that is constructed from a sum of responses of individual patches
in an image:
f(x) = \sum_p x^{[p]}
where x^{[p]} is the pth patch in the image.
@incollection{vdw2017convgp,
title = {Convolutional Gaussian Processes},
author = {van der Wilk, Mark and Rasmussen, Carl Edward and Hensman, James},
booktitle = {Advances in Neural Information Processing Systems 30},
year = {2017},
url = {http://papers.nips.cc/paper/6877-convolutional-gaussian-processes.pdf}
}
"""
def __init__(self, base_kernel, image_shape, patch_shape, weights=None, colour_channels=1):
super().__init__()
self.image_shape = image_shape
self.patch_shape = patch_shape
self.base_kernel = base_kernel
self.colour_channels = colour_channels
self.weights = Parameter(
np.ones(self.num_patches, dtype=default_float()) if weights is None else weights
)
# @lru_cache() -- Can we do some kind of memoizing with TF2?
def get_patches(self, X):
"""
Extracts patches from the images X. Patches are extracted separately for each of the colour channels.
:param X: (N x input_dim)
:return: Patches (N, num_patches, patch_shape)
"""
# Roll the colour channel to the front, so it appears to
# `tf.extract_image_patches()` as separate images. Then extract patches
# and reshape to have the first axis the same as the number of images.
# The separate patches will then be in the second axis.
num_data = tf.shape(X)[0]
castX = tf.transpose(tf.reshape(X, [num_data, -1, self.colour_channels]), [0, 2, 1])
patches = tf.image.extract_patches(
tf.reshape(castX, [-1, self.image_shape[0], self.image_shape[1], 1], name="rX"),
[1, self.patch_shape[0], self.patch_shape[1], 1],
[1, 1, 1, 1],
[1, 1, 1, 1],
"VALID",
)
shp = tf.shape(patches) # img x out_rows x out_cols
reshaped_patches = tf.reshape(
patches, [num_data, self.colour_channels * shp[1] * shp[2], shp[3]]
)
return to_default_float(reshaped_patches)
def K(self, X, X2=None):
Xp = self.get_patches(X) # [N, P, patch_len]
Xp2 = Xp if X2 is None else self.get_patches(X2)
bigK = self.base_kernel.K(Xp, Xp2) # [N, num_patches, N, num_patches]
W2 = self.weights[:, None] * self.weights[None, :] # [P, P]
W2bigK = bigK * W2[None, :, None, :]
return tf.reduce_sum(W2bigK, [1, 3]) / self.num_patches ** 2.0
def K_diag(self, X):
Xp = self.get_patches(X) # N x num_patches x patch_dim
W2 = self.weights[:, None] * self.weights[None, :] # [P, P]
bigK = self.base_kernel.K(Xp) # [N, P, P]
return tf.reduce_sum(bigK * W2[None, :, :], [1, 2]) / self.num_patches ** 2.0
@property
def patch_len(self):
return np.prod(self.patch_shape)
@property
def num_patches(self):
return (
(self.image_shape[0] - self.patch_shape[0] + 1)
* (self.image_shape[1] - self.patch_shape[1] + 1)
* self.colour_channels
)
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