https://github.com/sanger-pathogens/gubbins
Revision d06e3fd6820fed39f1824fbcedb2691fd988e24a authored by andrewjpage on 23 January 2015, 15:27:19 UTC, committed by andrewjpage on 23 January 2015, 15:27:19 UTC
1 parent 5450158
Tip revision: d06e3fd6820fed39f1824fbcedb2691fd988e24a authored by andrewjpage on 23 January 2015, 15:27:19 UTC
make tests past split
make tests past split
Tip revision: d06e3fd
ChangeLog
2012-11-2 Andrew J. Page <ap13@sanger.ac.uk>
* Prefilters the initial alignment, ignoring sequences with >25% missing data (the '--filter_percentage' parameter lets you vary this).
* SNPs are outputted on a per branch basis in tab format.
* The stats are now on a per branch basis rather than cumulatively built up from walking the tree.
* Node labelling in the recombination tab file now consistent with the tree internal node labels
2012-8-7 Andrew J. Page <ap13@sanger.ac.uk>
* Cleanup intermediate files by default
* Fix RF distance calculation and comparison
2012-4-24 Andrew J. Page <ap13@sanger.ac.uk>
* Initial beta testing version
Computing file changes ...
