# Manifold toolbox for MATLAB

**Calculation of manifold eccentricity, subcortical-weighted manifold, and wiring distance**

* **Features** \
Manifold eccentricity: 'ManEccen.m' \
Subcortical-weighted manifold: 'WeightedMan.m' \
Wiring distance: 'WiringDist.m'


* **Please cite the paper if you use this code** \
(Manifold eccentricity & Subcortical-weighted manifold): *B.-y. Park, R. A. I. Bethlehem, C. Paquola, S. Larivière, R. Rodríguez-Cruces, R. Vos de Wael, Neuroscience in Psychiatry Network (NSPN) Consortium, E. T. Bullmore,  and B. C. Bernhardt.* An expanding manifold characterizes adolescent reconfigurations of structural connectome organization. *bioRxiv* (2020). \
https://www.biorxiv.org/content/10.1101/2020.06.22.165621v2 \
\
(Wiring distance): *R. A. I. Bethlehem, C. Paquola, J. Seidlitz, L. Ronan, B. Bernhardt, CAM-CAN Consortium, and K. A. Tsvetanov.* Dispersion of functional gradients across the adult lifespan. *NeuroImage* (2020). \
https://www.sciencedirect.com/science/article/pii/S1053811920307850


# Prerequisite
* **Prerequisite MATLAB toolbox** \
BrainSpace: https://github.com/MICA-MNI/BrainSpace/tree/Development \
GIFTI: https://www.artefact.tk/software/matlab/gifti \
SurfStat: https://www.math.mcgill.ca/keith/surfstat


# Websites

* **Personal:** http://by9433.wixsite.com/boyongpark 

* **LAB (MICA: Multimodal Imaging and Connectome Analysis):** http://mica-mni.github.io/