https://github.com/cran/cutpointr
Revision d461e559d4a76b7fcbd728470ca12cce56d3ffab authored by Christian Thiele on 19 June 2020, 11:00:06 UTC, committed by cran-robot on 19 June 2020, 11:00:06 UTC
1 parent bbfd829
Tip revision: d461e559d4a76b7fcbd728470ca12cce56d3ffab authored by Christian Thiele on 19 June 2020, 11:00:06 UTC
version 1.0.32
version 1.0.32
Tip revision: d461e55
print.summary_cutpointr.R
#' @export
print.summary_cutpointr <- function(x, digits = 4, ...) {
cat(paste("Method:", x$cutpointr[[1]]$method, "\n"))
cat(paste("Predictor:", x$cutpointr[[1]]$predictor, "\n"))
cat(paste("Outcome:", x$cutpointr[[1]]$outcome, "\n"))
cat(paste("Direction:", x$cutpointr[[1]]$direction, "\n"))
if (has_column(x$cutpointr[[1]], "subgroup")) {
cat(c("Subgroups:",
paste(purrr::map(x$cutpointr, ~ .$subgroup), collapse = ", "),
"\n"))
}
if (has_boot_results(x)) {
cat(paste("Nr. of bootstraps:", x$boot_runs[1], "\n"))
}
for (i in 1:nrow(x)) {
cat("\n")
if (has_column(x$cutpointr[[i]], "subgroup")) {
cat(paste("Subgroup:", x$cutpointr[[i]]$subgroup, "\n"))
cat(paste0(rep("-", getOption("width")), collapse = ""), "\n")
}
x$cutpointr[[i]] %>%
dplyr::select(.data$AUC) %>%
round(digits = digits) %>%
dplyr::mutate(n = x$n_obs[i],
n_pos = x$n_pos[i],
n_neg = x$n_neg[i]) %>%
as.data.frame %>%
print(row.names = FALSE)
cat("\n")
purrr::map_df(1:length(x$cutpointr[[i]]$optimal_cutpoint[[1]]), function(j) {
x$cutpointr[[i]] %>%
dplyr::select(.data$optimal_cutpoint,
!!find_metric_name(x$cutpointr[[i]]),
.data$acc, .data$sensitivity,
.data$specificity) %>%
purrr::map_df(get_fnth, n = j)
}) %>%
as.data.frame %>%
dplyr::left_join(y = x$confusion_matrix[[i]],
by = c("optimal_cutpoint" = "cutpoint")) %>%
round(digits = digits) %>%
print(row.names = FALSE)
cat("\n")
cat(paste("Predictor summary:", "\n"))
rownames(x$desc[[i]]) <- "overall"
print(round(rbind(x$desc[[i]], x$desc_by_class[[i]]), digits = digits))
if (has_boot_results(x[i, ])) {
cat("\n")
cat(paste("Bootstrap summary:", "\n"))
print.data.frame(
x[["boot"]][[i]] %>%
dplyr::mutate_if(is.numeric, round, digits = digits),
row.names = rep("", nrow(x[["boot"]][[i]]))
)
}
}
return(invisible(x))
}

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