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Revision d64c7115b852e3a269ed9e3c069a3485b34bbea5 authored by Eric Sanford on 10 October 2019, 18:04:36 UTC, committed by Eric Sanford on 10 October 2019, 18:04:36 UTC
added location of hg19 reference files as comments to setEnvironmentVariables.sh script
1 parent c5b88eb
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  • Snakemake_bulkRNA
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  • schemas
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  • units.schema.yaml
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units.schema.yaml
$schema: "http://json-schema.org/draft-06/schema#"
description: row of the units.tsv, representing a sequencing unit, i.e. single-end or paired-end data
type: object
properties:
  sample:
    type: string
    description: sample name/id the unit has been sequenced from
  unit:
    type: string
    description: unit id
  fq1:
    type: string
    description: path to FASTQ file
  fq2:
    type: string
    description: path to second FASTQ file (leave empty in case of single-end)
  strandedness:
    type: string
    description: one of the values '0', 'yes' or 'reverse' according to protocol strandedness
required:
  - sample
  - unit
  - fq1
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