Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

Revision d745e74710ab581d489e815095d0dd4ee91e9c35 authored by Bryna Hazelton on 15 September 2025, 18:00:43 UTC, committed by Jonathan Pober on 15 September 2025, 18:31:58 UTC
remove macos-13 from our CI matrix because it is deprecated
1 parent ea19da5
  • Files
  • Changes
  • 0617af3
  • /
  • tests
  • /
  • utils
  • /
  • test_array_collapse.py
Raw File Download

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • revision
  • directory
  • content
revision badge
swh:1:rev:d745e74710ab581d489e815095d0dd4ee91e9c35
directory badge
swh:1:dir:44d91f34b75d4752e8467339185a98db104ff524
content badge
swh:1:cnt:ad65d7a3e663e74b67e6f94491d312809937dd6e

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • revision
  • directory
  • content
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
test_array_collapse.py
# Copyright (c) 2024 Radio Astronomy Software Group
# Licensed under the 2-clause BSD License
"""Testing for collapsing utilities."""

import numpy as np
import pytest

from pyuvdata.testing import check_warnings
from pyuvdata.utils import array_collapse


def test_collapse_mean_no_return_no_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i])
    out = array_collapse.collapse(data, "mean", axis=0)
    out1 = array_collapse.mean_collapse(data, axis=0)
    # Actual values are tested in test_mean_no_weights
    assert np.array_equal(out, out1)


def test_collapse_mean_returned_no_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i])
    out, wo = array_collapse.collapse(data, "mean", axis=0, return_weights=True)
    out1, wo1 = array_collapse.mean_collapse(data, axis=0, return_weights=True)
    # Actual values are tested in test_mean_no_weights
    assert np.array_equal(out, out1)
    assert np.array_equal(wo, wo1)


def test_collapse_mean_returned_with_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i]) + 1
    w = 1.0 / data
    out, wo = array_collapse.collapse(
        data, "mean", weights=w, axis=0, return_weights=True
    )
    out1, wo1 = array_collapse.mean_collapse(
        data, weights=w, axis=0, return_weights=True
    )
    # Actual values are tested in test_mean_weights
    assert np.array_equal(out, out1)
    assert np.array_equal(wo, wo1)


def test_collapse_mean_returned_with_weights_and_weights_square():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i]) + 1
    w = 1.0 / data
    out, wo, wso = array_collapse.collapse(
        data, "mean", weights=w, axis=0, return_weights=True, return_weights_square=True
    )
    out1, wo1, wso1 = array_collapse.mean_collapse(
        data, weights=w, axis=0, return_weights=True, return_weights_square=True
    )
    # Actual values are tested in test_mean_weights
    assert np.array_equal(out, out1)
    assert np.array_equal(wo, wo1)
    assert np.array_equal(wso, wso1)


def test_collapse_mean_returned_with_weights_square_no_return_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i]) + 1
    w = 1.0 / data
    out, wso = array_collapse.collapse(
        data,
        "mean",
        weights=w,
        axis=0,
        return_weights=False,
        return_weights_square=True,
    )
    out1, wso1 = array_collapse.mean_collapse(
        data, weights=w, axis=0, return_weights=False, return_weights_square=True
    )
    # Actual values are tested in test_mean_weights
    assert np.array_equal(out, out1)
    assert np.array_equal(wso, wso1)


def test_collapse_absmean_no_return_no_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = (-1) ** i * np.ones_like(data[:, i])
    out = array_collapse.collapse(data, "absmean", axis=0)
    out1 = array_collapse.absmean_collapse(data, axis=0)
    # Actual values are tested in test_absmean_no_weights
    assert np.array_equal(out, out1)


def test_collapse_quadmean_no_return_no_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i])
    out = array_collapse.collapse(data, "quadmean", axis=0)
    out1 = array_collapse.quadmean_collapse(data, axis=0)
    # Actual values are tested elsewhere?
    assert np.array_equal(out, out1)


def test_collapse_quadmean_returned_with_weights_and_weights_square():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i]) + 1
    w = 1.0 / data
    out, wo, wso = array_collapse.collapse(
        data,
        "quadmean",
        weights=w,
        axis=0,
        return_weights=True,
        return_weights_square=True,
    )
    out1, wo1, wso1 = array_collapse.quadmean_collapse(
        data, weights=w, axis=0, return_weights=True, return_weights_square=True
    )
    # Actual values are tested elsewhere?
    assert np.array_equal(out, out1)
    assert np.array_equal(wo, wo1)
    assert np.array_equal(wso, wso1)


def test_collapse_quadmean_returned_with_weights_square_no_return_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i]) + 1
    w = 1.0 / data
    out, wso = array_collapse.collapse(
        data,
        "quadmean",
        weights=w,
        axis=0,
        return_weights=False,
        return_weights_square=True,
    )
    out1, wso1 = array_collapse.quadmean_collapse(
        data, weights=w, axis=0, return_weights=False, return_weights_square=True
    )
    # Actual values are tested elsewhere?
    assert np.array_equal(out, out1)
    assert np.array_equal(wso, wso1)


def test_collapse_quadmean_returned_without_weights_square_with_return_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i]) + 1
    w = 1.0 / data
    out, wo = array_collapse.collapse(
        data,
        "quadmean",
        weights=w,
        axis=0,
        return_weights=True,
        return_weights_square=False,
    )
    out1, wo1 = array_collapse.quadmean_collapse(
        data, weights=w, axis=0, return_weights=True, return_weights_square=False
    )
    # Actual values are tested elsewhere?
    assert np.array_equal(out, out1)
    assert np.array_equal(wo, wo1)


def test_collapse_quadmean_returned_with_weights_square_without_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i]) + 1
    w = 1.0 / data
    out, wo = array_collapse.collapse(
        data,
        "quadmean",
        weights=w,
        axis=0,
        return_weights=False,
        return_weights_square=True,
    )
    out1, wo1 = array_collapse.quadmean_collapse(
        data, weights=w, axis=0, return_weights=False, return_weights_square=True
    )
    # Actual values are tested elsewhere?
    assert np.array_equal(out, out1)
    assert np.array_equal(wo, wo1)


def test_collapse_or_no_return_no_weights():
    # Fake data
    data = np.zeros((50, 25), np.bool_)
    data[0, 8] = True
    o = array_collapse.collapse(data, "or", axis=0)
    o1 = array_collapse.or_collapse(data, axis=0)
    assert np.array_equal(o, o1)


def test_collapse_and_no_return_no_weights():
    # Fake data
    data = np.zeros((50, 25), np.bool_)
    data[0, :] = True
    o = array_collapse.collapse(data, "and", axis=0)
    o1 = array_collapse.and_collapse(data, axis=0)
    assert np.array_equal(o, o1)


def test_collapse_error():
    pytest.raises(ValueError, array_collapse.collapse, np.ones((2, 3)), "fooboo")


def test_mean_no_weights():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i])
    out, wo = array_collapse.mean_collapse(data, axis=0, return_weights=True)
    assert np.array_equal(out, np.arange(data.shape[1]))
    assert np.array_equal(wo, data.shape[0] * np.ones(data.shape[1]))
    out, wo = array_collapse.mean_collapse(data, axis=1, return_weights=True)
    assert np.all(out == np.mean(np.arange(data.shape[1])))
    assert len(out) == data.shape[0]
    assert np.array_equal(wo, data.shape[1] * np.ones(data.shape[0]))
    out, wo = array_collapse.mean_collapse(data, return_weights=True)
    assert out == np.mean(np.arange(data.shape[1]))
    assert wo == data.size
    out = array_collapse.mean_collapse(data)
    assert out == np.mean(np.arange(data.shape[1]))


def test_mean_weights_and_weights_square():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i]) + 1
    w = 1.0 / data
    out, wo, wso = array_collapse.mean_collapse(
        data, weights=w, axis=0, return_weights=True, return_weights_square=True
    )
    np.testing.assert_allclose(out * wo, data.shape[0])
    np.testing.assert_allclose(
        wo, float(data.shape[0]) / (np.arange(data.shape[1]) + 1)
    )
    np.testing.assert_allclose(
        wso, float(data.shape[0]) / (np.arange(data.shape[1]) + 1) ** 2
    )
    out, wo, wso = array_collapse.mean_collapse(
        data, weights=w, axis=1, return_weights=True, return_weights_square=True
    )
    np.testing.assert_allclose(out * wo, data.shape[1])
    np.testing.assert_allclose(wo, np.sum(1.0 / (np.arange(data.shape[1]) + 1)))
    np.testing.assert_allclose(wso, np.sum(1.0 / (np.arange(data.shape[1]) + 1) ** 2))

    # Zero weights
    w = np.ones_like(data)
    w[0, :] = 0
    w[:, 0] = 0
    out, wo = array_collapse.mean_collapse(data, weights=w, axis=0, return_weights=True)
    ans = np.arange(data.shape[1]).astype(np.float64) + 1
    ans[0] = np.inf
    assert np.array_equal(out, ans)
    ans = (data.shape[0] - 1) * np.ones(data.shape[1])
    ans[0] = 0
    assert np.all(wo == ans)
    out, wo = array_collapse.mean_collapse(data, weights=w, axis=1, return_weights=True)
    ans = np.mean(np.arange(data.shape[1])[1:] + 1) * np.ones(data.shape[0])
    ans[0] = np.inf
    assert np.all(out == ans)
    ans = (data.shape[1] - 1) * np.ones(data.shape[0])
    ans[0] = 0
    assert np.all(wo == ans)


def test_mean_infs():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i])
    data[:, 0] = np.inf
    data[0, :] = np.inf
    out, wo = array_collapse.mean_collapse(data, axis=0, return_weights=True)
    ans = np.arange(data.shape[1]).astype(np.float64)
    ans[0] = np.inf
    assert np.array_equal(out, ans)
    ans = (data.shape[0] - 1) * np.ones(data.shape[1])
    ans[0] = 0
    assert np.all(wo == ans)
    out, wo = array_collapse.mean_collapse(data, axis=1, return_weights=True)
    ans = np.mean(np.arange(data.shape[1])[1:]) * np.ones(data.shape[0])
    ans[0] = np.inf
    assert np.all(out == ans)
    ans = (data.shape[1] - 1) * np.ones(data.shape[0])
    ans[0] = 0
    assert np.all(wo == ans)


def test_absmean():
    # Fake data
    data1 = np.zeros((50, 25))
    for i in range(data1.shape[1]):
        data1[:, i] = (-1) ** i * np.ones_like(data1[:, i])
    data2 = np.ones_like(data1)
    out1 = array_collapse.absmean_collapse(data1)
    out2 = array_collapse.absmean_collapse(data2)
    assert out1 == out2


def test_quadmean():
    # Fake data
    data = np.zeros((50, 25))
    for i in range(data.shape[1]):
        data[:, i] = i * np.ones_like(data[:, i])
    o1, w1 = array_collapse.quadmean_collapse(data, return_weights=True)
    o2, w2 = array_collapse.mean_collapse(np.abs(data) ** 2, return_weights=True)
    o3 = array_collapse.quadmean_collapse(data)  # without return_weights
    o2 = np.sqrt(o2)
    assert o1 == o2
    assert w1 == w2
    assert o1 == o3


def test_or_collapse():
    # Fake data
    data = np.zeros((50, 25), np.bool_)
    data[0, 8] = True
    o = array_collapse.or_collapse(data, axis=0)
    ans = np.zeros(25, np.bool_)
    ans[8] = True
    assert np.array_equal(o, ans)
    o = array_collapse.or_collapse(data, axis=1)
    ans = np.zeros(50, np.bool_)
    ans[0] = True
    assert np.array_equal(o, ans)
    o = array_collapse.or_collapse(data)
    assert o


def test_or_collapse_weights():
    # Fake data
    data = np.zeros((50, 25), np.bool_)
    data[0, 8] = True
    w = np.ones_like(data, np.float64)
    o, wo = array_collapse.or_collapse(data, axis=0, weights=w, return_weights=True)
    ans = np.zeros(25, np.bool_)
    ans[8] = True
    assert np.array_equal(o, ans)
    assert np.array_equal(wo, np.ones_like(o, dtype=np.float64))
    w[0, 8] = 0.3
    with check_warnings(UserWarning, "Currently weights are"):
        o = array_collapse.or_collapse(data, axis=0, weights=w)
    assert np.array_equal(o, ans)


def test_or_collapse_errors():
    data = np.zeros(5)
    pytest.raises(ValueError, array_collapse.or_collapse, data)


def test_and_collapse():
    # Fake data
    data = np.zeros((50, 25), np.bool_)
    data[0, :] = True
    o = array_collapse.and_collapse(data, axis=0)
    ans = np.zeros(25, np.bool_)
    assert np.array_equal(o, ans)
    o = array_collapse.and_collapse(data, axis=1)
    ans = np.zeros(50, np.bool_)
    ans[0] = True
    assert np.array_equal(o, ans)
    o = array_collapse.and_collapse(data)
    assert not o


def test_and_collapse_weights():
    # Fake data
    data = np.zeros((50, 25), np.bool_)
    data[0, :] = True
    w = np.ones_like(data, np.float64)
    o, wo = array_collapse.and_collapse(data, axis=0, weights=w, return_weights=True)
    ans = np.zeros(25, np.bool_)
    assert np.array_equal(o, ans)
    assert np.array_equal(wo, np.ones_like(o, dtype=np.float64))
    w[0, 8] = 0.3
    with check_warnings(UserWarning, "Currently weights are"):
        o = array_collapse.and_collapse(data, axis=0, weights=w)
    assert np.array_equal(o, ans)


def test_and_collapse_errors():
    data = np.zeros(5)
    pytest.raises(ValueError, array_collapse.and_collapse, data)
The diff you're trying to view is too large. Only the first 1000 changed files have been loaded.
Showing with 0 additions and 0 deletions (0 / 0 diffs computed)
swh spinner

Computing file changes ...

back to top

Software Heritage — Copyright (C) 2015–2026, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Content policy— Contact— JavaScript license information— Web API