| d76dcc5 | Daniel A. Wagenaar | 07 March 2020, 05:53:12 UTC | Cleaned up repo for paper submission | 07 March 2020, 05:53:12 UTC |
| b3723b9 | Daniel Wagenaar | 06 January 2020, 00:53:15 UTC | working on documentation | 06 January 2020, 00:53:15 UTC |
| e052738 | Daniel Wagenaar | 05 January 2020, 23:59:32 UTC | Before splitting off realign | 05 January 2020, 23:59:32 UTC |
| 3c2e8fe | Daniel A. Wagenaar | 05 January 2020, 23:32:02 UTC | renderq1 now ignores dark source pixels | 05 January 2020, 23:32:02 UTC |
| a5aa4f8 | Daniel A. Wagenaar | 05 January 2020, 23:31:45 UTC | inferruns finds out runinfo based on file system | 05 January 2020, 23:31:45 UTC |
| 08c70b2 | Daniel A. Wagenaar | 05 January 2020, 23:30:15 UTC | Merge branch 'master' of leech.caltech.edu:/lab/dw/git/sbemtools | 05 January 2020, 23:30:15 UTC |
| 42434f4 | Daniel Wagenaar | 05 January 2020, 23:30:08 UTC | rawimage now allows ignorethr passthrough in fullq1img | 05 January 2020, 23:30:08 UTC |
| 37cafc8 | Daniel A. Wagenaar | 05 January 2020, 23:20:08 UTC | Merge branch 'master' of leech.caltech.edu:/lab/dw/git/sbemtools | 05 January 2020, 23:20:08 UTC |
| 6e78b23 | Daniel A. Wagenaar | 05 January 2020, 23:20:04 UTC | zcombine lacked a maketable call | 05 January 2020, 23:20:04 UTC |
| b89ccb4 | Daniel Wagenaar | 05 January 2020, 23:19:20 UTC | Removed a lot of stale code | 05 January 2020, 23:19:20 UTC |
| c7210ae | Daniel Wagenaar | 05 January 2020, 21:34:13 UTC | zcombine now uses db table | 05 January 2020, 21:34:13 UTC |
| fb91d8b | Daniel Wagenaar | 05 January 2020, 21:17:44 UTC | Improved rendering at Q1 with charge artifacts. See E&R pp 1658ff | 05 January 2020, 21:17:44 UTC |
| caba26e | Daniel A. Wagenaar | 05 January 2020, 20:14:34 UTC | merged | 05 January 2020, 20:14:34 UTC |
| ecb1677 | Daniel A. Wagenaar | 05 January 2020, 20:12:57 UTC | chunkification | 05 January 2020, 20:12:57 UTC |
| 5acf809 | Daniel A. Wagenaar | 23 December 2019, 18:26:28 UTC | chunkify creates 32x32x32 pixel chunks | 23 December 2019, 18:26:28 UTC |
| 1e6ec2a | Daniel A. Wagenaar | 23 December 2019, 17:50:35 UTC | zcombine.py now does what octave version did, plus create an info file for neuroglancer | 23 December 2019, 17:50:35 UTC |
| 1bb1764 | Daniel A. Wagenaar | 23 December 2019, 16:50:46 UTC | renderq1 now uses stretch=2% | 23 December 2019, 16:50:46 UTC |
| b82887e | Daniel A. Wagenaar | 21 December 2019, 05:16:51 UTC | prepping for neuroglancer | 21 December 2019, 05:17:08 UTC |
| 57d55a1 | Daniel Wagenaar | 20 December 2019, 22:44:24 UTC | older changes | 20 December 2019, 22:44:24 UTC |
| d9de0ad | Daniel Wagenaar | 20 December 2019, 22:43:33 UTC | working on coordinate transfer | 20 December 2019, 22:43:33 UTC |
| b1e3ec6 | Daniel Wagenaar | 20 December 2019, 20:29:14 UTC | working on forward mapper | 20 December 2019, 20:29:14 UTC |
| e07c3ba | Daniel Wagenaar | 20 December 2019, 18:02:48 UTC | Merge branch 'master' of leech:/lab/dw/git/sbemtools | 20 December 2019, 18:02:48 UTC |
| 083ac39 | Daniel Wagenaar | 20 December 2019, 18:02:43 UTC | Created q1emovie | 20 December 2019, 18:02:43 UTC |
| ac8f31a | Daniel A. Wagenaar | 17 December 2019, 18:17:37 UTC | fixing slicealignq5 | 17 December 2019, 18:17:37 UTC |
| 51fa46c | Daniel A. Wagenaar | 16 December 2019, 17:48:34 UTC | working on tension calc | 16 December 2019, 17:48:34 UTC |
| fa13269 | Daniel Wagenaar | 16 December 2019, 17:41:27 UTC | Merge branch 'master' of leech.caltech.edu:/lab/dw/git/sbemtools | 16 December 2019, 17:41:27 UTC |
| 8aa90c9 | Daniel A. Wagenaar | 16 December 2019, 17:41:21 UTC | working on tension calculations | 16 December 2019, 17:41:21 UTC |
| 39a87ec | Daniel Wagenaar | 16 December 2019, 16:38:52 UTC | Merge branch 'master' of leech.caltech.edu:/lab/dw/git/sbemtools | 16 December 2019, 16:38:52 UTC |
| 25ca387 | Daniel A. Wagenaar | 16 December 2019, 16:38:42 UTC | Matchpoints now drops terrible trans results. | 16 December 2019, 16:38:42 UTC |
| 994addd | Daniel Wagenaar | 16 December 2019, 04:22:14 UTC | Many older improvements | 16 December 2019, 04:22:14 UTC |
| 5d8defa | Daniel A. Wagenaar | 16 December 2019, 04:21:49 UTC | improvement to matchpointsq5 to resolve mismatch at Z8194:8195 | 16 December 2019, 04:21:49 UTC |
| 4886a8d | Daniel Wagenaar | 11 December 2019, 23:37:00 UTC | more checks | 11 December 2019, 23:37:00 UTC |
| 53d749c | Daniel Wagenaar | 11 December 2019, 19:58:53 UTC | merged | 11 December 2019, 19:58:53 UTC |
| 5082b01 | Daniel Wagenaar | 11 December 2019, 19:57:57 UTC | older edits to q5emovie and q5toq25 | 11 December 2019, 19:57:57 UTC |
| d1e7ad0 | Daniel Wagenaar | 11 December 2019, 17:16:20 UTC | bugfix to solveq5elastic; commented out prints in renderq5elastic | 11 December 2019, 17:16:20 UTC |
| b24dfd2 | Daniel A. Wagenaar | 11 December 2019, 16:52:59 UTC | Attempt to make solveq5elastic more db efficient | 11 December 2019, 16:52:59 UTC |
| ca65fe0 | Daniel A. Wagenaar | 11 December 2019, 16:51:40 UTC | Attempt to make solveq5elastic more db efficient | 11 December 2019, 16:51:40 UTC |
| 2ec3b97 | Daniel A. Wagenaar | 11 December 2019, 16:36:00 UTC | further checks reveal other issues in second half of solve. redoing all from z=4804 on up. | 11 December 2019, 16:36:00 UTC |
| 6827b8d | Daniel A. Wagenaar | 10 December 2019, 19:35:33 UTC | code to check subvolume contents consistency of solveq5elastic | 10 December 2019, 19:35:33 UTC |
| 0a831d3 | Daniel Wagenaar | 10 December 2019, 19:35:01 UTC | more bugfixes. renderq5elastic now can do single slices | 10 December 2019, 19:35:01 UTC |
| 0b48f40 | Daniel Wagenaar | 10 December 2019, 19:07:30 UTC | bugfix to solveq5elastic indiv | 10 December 2019, 19:07:30 UTC |
| b1ede8e | Daniel A. Wagenaar | 10 December 2019, 19:05:27 UTC | bugfix to solveq5elastic individualizer | 10 December 2019, 19:05:27 UTC |
| 19138d0 | Daniel A. Wagenaar | 10 December 2019, 17:05:49 UTC | added in q5emovie; added optional command line option to solveq5elastic | 10 December 2019, 17:05:49 UTC |
| 8fc246c | Daniel A. Wagenaar | 10 December 2019, 06:18:53 UTC | Merge branch 'master' of leech.caltech.edu:/usr/local/dw/git/sbemtools | 10 December 2019, 06:18:53 UTC |
| 9aea5ec | Daniel Wagenaar | 10 December 2019, 06:18:33 UTC | older changes to renderq1 and renderq5elastic logging | 10 December 2019, 06:18:33 UTC |
| 6fc7785 | Daniel A. Wagenaar | 10 December 2019, 06:13:05 UTC | bugfix to findmuck191209. Should have had with db.db: as part of transaction incantation. | 10 December 2019, 06:14:07 UTC |
| 4ebf872 | Daniel A. Wagenaar | 10 December 2019, 06:03:46 UTC | Created script findmuck191209 to delete affected rows in solveq5elastic and render tables. The "bad" z0 values are: 604 704 804 1504 1604 1704 1804 1904 2004 2404 2504 2804 2904 3204 3304 3404 4004 4104 4404 4504 4604 4704 4804 4904 5204 5304 5504 5604 5704 6004 6104 6604 6704 6804 7704 7804 7904 8004 8104 | 10 December 2019, 06:03:46 UTC |
| 859d984 | Daniel A. Wagenaar | 10 December 2019, 02:50:50 UTC | Merge branch 'master' of leech.caltech.edu:/usr/local/dw/git/sbemtools | 10 December 2019, 02:50:50 UTC |
| 6902ea6 | Daniel A. Wagenaar | 10 December 2019, 02:50:44 UTC | major bugfix to matchpointsq5: trans was wrong where m1!=m2 | 10 December 2019, 02:50:44 UTC |
| c798462 | Daniel Wagenaar | 06 December 2019, 17:54:32 UTC | debugging renderq1 | 06 December 2019, 17:54:32 UTC |
| 31f9689 | Daniel Wagenaar | 06 December 2019, 17:49:19 UTC | debugging renderq1 | 06 December 2019, 17:49:19 UTC |
| 36caec3 | Daniel Wagenaar | 06 December 2019, 17:46:04 UTC | debugging renderq1 | 06 December 2019, 17:46:04 UTC |
| 98a983a | Daniel Wagenaar | 06 December 2019, 17:38:39 UTC | renderq1 now uses zero padding | 06 December 2019, 17:38:39 UTC |
| 03f53a0 | Daniel A. Wagenaar | 06 December 2019, 05:22:52 UTC | working on pyramid | 06 December 2019, 05:22:52 UTC |
| 674d4d6 | Daniel Wagenaar | 06 December 2019, 05:02:56 UTC | working on renderq1 | 06 December 2019, 05:02:56 UTC |
| 3309a19 | Daniel A. Wagenaar | 06 December 2019, 04:51:18 UTC | added fullq1img to rawimage.py | 06 December 2019, 04:51:18 UTC |
| 91de328 | Daniel A. Wagenaar | 06 December 2019, 04:46:53 UTC | working on renderq1 | 06 December 2019, 04:46:53 UTC |
| 8e6fac0 | Daniel A. Wagenaar | 06 December 2019, 04:16:50 UTC | renderq5elastic fixed | 06 December 2019, 04:16:50 UTC |
| a766ff0 | Daniel A. Wagenaar | 06 December 2019, 04:00:44 UTC | merged | 06 December 2019, 04:00:44 UTC |
| 82e9b03 | Daniel A. Wagenaar | 06 December 2019, 04:00:11 UTC | yesterday work | 06 December 2019, 04:00:11 UTC |
| 6973d8e | Daniel Wagenaar | 05 December 2019, 20:10:47 UTC | working on renderq5elastic | 05 December 2019, 20:10:47 UTC |
| 2ab9b6b | Daniel Wagenaar | 05 December 2019, 19:28:49 UTC | major bugfix in matchpointsq5 that affected elasticity | 05 December 2019, 19:28:49 UTC |
| 285b149 | Daniel A. Wagenaar | 05 December 2019, 07:18:22 UTC | still not getting why solveq5elastic not great | 05 December 2019, 07:18:22 UTC |
| 4994810 | Daniel Wagenaar | 05 December 2019, 00:37:25 UTC | why is elastic not better | 05 December 2019, 00:37:25 UTC |
| 8c0ca6b | Daniel Wagenaar | 04 December 2019, 20:24:11 UTC | studying warp at q5 | 04 December 2019, 20:24:11 UTC |
| 9e71f0f | Daniel Wagenaar | 19 November 2019, 21:17:41 UTC | working onwarp | 19 November 2019, 21:17:41 UTC |
| 0fc59c2 | Daniel Wagenaar | 19 November 2019, 18:34:07 UTC | bugfix to matchpointsq5:allpoints: now creates empty entry if no points, so no more key errors. alltrans now gives warning rather than crash if nothing >thr | 19 November 2019, 18:34:07 UTC |
| 5788af7 | Daniel Wagenaar | 19 November 2019, 18:30:43 UTC | bugfix to matchpointsq5:allpoints: now creates empty entry if no points, so no more key errors. alltrans now gives warning rather than crash if nothing >thr | 19 November 2019, 18:30:43 UTC |
| 815ac71 | Daniel Wagenaar | 19 November 2019, 18:23:10 UTC | bugfix to matchpointsq5:allpoints: now creates empty entry if no points, so no more key errors. alltrans now gives warning rather than crash if nothing >thr | 19 November 2019, 18:23:10 UTC |
| d171ef5 | Daniel Wagenaar | 19 November 2019, 18:09:03 UTC | matchpoints now tolerates lack of matchpoints, reports warning | 19 November 2019, 18:09:03 UTC |
| 7ba27e2 | Daniel A. Wagenaar | 19 November 2019, 13:50:07 UTC | bugfix to matchpointsq5 due to python indentation pain | 19 November 2019, 13:50:07 UTC |
| 7aa2d6d | Daniel A. Wagenaar | 19 November 2019, 05:00:32 UTC | solveq5elastic now uses alltrans | 19 November 2019, 05:00:32 UTC |
| 4a41d1a | Daniel A. Wagenaar | 19 November 2019, 04:57:13 UTC | bugfix to matchpointsq5 | 19 November 2019, 04:57:13 UTC |
| 0d39247 | Daniel A. Wagenaar | 19 November 2019, 04:53:37 UTC | solveq5rigidtile now uses both trans | 19 November 2019, 04:53:37 UTC |
| b05d9a3 | Daniel A. Wagenaar | 19 November 2019, 04:48:06 UTC | solveq5mont now uses backward trans as well | 19 November 2019, 04:48:06 UTC |
| a9c252d | Daniel A. Wagenaar | 18 November 2019, 17:33:46 UTC | Working on effects of updated transrunmontq5 | 18 November 2019, 17:33:57 UTC |
| 49ca195 | Daniel A. Wagenaar | 18 November 2019, 17:17:16 UTC | transrunmontq5 now does reverse as well | 18 November 2019, 17:17:16 UTC |
| 10bfdd1 | Daniel A. Wagenaar | 18 November 2019, 16:50:25 UTC | reconsidering weights in solveelastic | 18 November 2019, 16:50:25 UTC |
| acc6a81 | Daniel A. Wagenaar | 18 November 2019, 05:55:42 UTC | renderq5utils reasonably good, I think. | 18 November 2019, 05:55:42 UTC |
| e4a31e0 | Daniel A. Wagenaar | 18 November 2019, 05:17:18 UTC | Bugfix to matchpointsq5 for edgepoints; working on renderutils | 18 November 2019, 05:17:18 UTC |
| 417f675 | Daniel A. Wagenaar | 16 November 2019, 05:12:06 UTC | Major bug in matchpointsq5 fixed that totally invalidated solveq5elastic | 16 November 2019, 05:12:06 UTC |
| 1315fc8 | Daniel Wagenaar | 15 November 2019, 22:41:50 UTC | renderq5rigid now works great | 15 November 2019, 22:41:50 UTC |
| 58075a6 | Daniel A. Wagenaar | 15 November 2019, 22:33:39 UTC | renderq5rigid | 15 November 2019, 22:33:39 UTC |
| 659ce29 | Daniel Wagenaar | 15 November 2019, 15:12:07 UTC | Merge branch 'master' of leech.caltech.edu:/lab/dw/git/sbemtools | 15 November 2019, 15:12:07 UTC |
| e26d39d | Daniel A. Wagenaar | 15 November 2019, 15:09:49 UTC | weaker version of solveq5elastic | 15 November 2019, 15:09:49 UTC |
| b773df2 | Daniel Wagenaar | 15 November 2019, 06:30:33 UTC | Merge branch 'master' of leech.caltech.edu:/lab/dw/git/sbemtools | 15 November 2019, 06:30:33 UTC |
| 771a651 | Daniel Wagenaar | 15 November 2019, 06:30:28 UTC | executable | 15 November 2019, 06:30:28 UTC |
| c81aee5 | Daniel A. Wagenaar | 15 November 2019, 06:30:17 UTC | bugfix | 15 November 2019, 06:30:17 UTC |
| 5546d92 | Daniel A. Wagenaar | 15 November 2019, 06:28:02 UTC | solveq5elastic written | 15 November 2019, 06:28:02 UTC |
| d52ef54 | Daniel Wagenaar | 14 November 2019, 22:44:02 UTC | working on solveelastic | 14 November 2019, 22:44:02 UTC |
| 5103f74 | Daniel A. Wagenaar | 14 November 2019, 16:25:08 UTC | Merge branch 'master' of leech.caltech.edu:/usr/local/dw/git/sbemtools | 14 November 2019, 16:25:08 UTC |
| 100cbb8 | Daniel A. Wagenaar | 14 November 2019, 16:25:01 UTC | bugfix to matchpoints | 14 November 2019, 16:25:01 UTC |
| 087f877 | Daniel Wagenaar | 14 November 2019, 16:18:49 UTC | matchpointsq5 now explicitly excuses R35S130M>=6 so solveq5rigidtile can complete Z0=6104 and 6204 | 14 November 2019, 16:18:49 UTC |
| 7c17b82 | Daniel A. Wagenaar | 14 November 2019, 16:06:59 UTC | solveq5rigidtile now truly uses dynamic thresholds on a per-slice basis | 14 November 2019, 16:06:59 UTC |
| cdafa57 | Daniel Wagenaar | 14 November 2019, 05:47:45 UTC | solveq5rigidtile now also uses dynamic threshold | 14 November 2019, 05:47:45 UTC |
| d55e9bc | Daniel A. Wagenaar | 14 November 2019, 05:40:58 UTC | transrunmontq5 now treats r35 specially | 14 November 2019, 05:40:58 UTC |
| b9fcfb0 | Daniel Wagenaar | 14 November 2019, 05:37:43 UTC | still working on transrunmont | 14 November 2019, 05:37:43 UTC |
| 1eabe7c | Daniel Wagenaar | 14 November 2019, 05:37:31 UTC | still working on transrunmont | 14 November 2019, 05:37:31 UTC |
| db400ac | Daniel A. Wagenaar | 14 November 2019, 05:28:13 UTC | removed warp from transrunmont | 14 November 2019, 05:28:13 UTC |
| c89e275 | Daniel A. Wagenaar | 14 November 2019, 05:27:07 UTC | allowing third swim in transrunmont if dxb is still not great | 14 November 2019, 05:27:07 UTC |
