*egg-info
*.pyc
*.o
config.log
src/gubbins
tests/run_all_tests
src/run_all_tests
.DS_Store
src/Makefile
src/.deps
autom4te.cache/*
*.lo
*~
src/.libs/*
src/libPyGubbins_la-PyGubbins.loT
src/libgubbins.la
#Makefile.in
#aclocal.m4
#config.*
#configure
#depcomp
graph
#install-sh
libtool
#ltmain.sh
#missing
run_gubbins.pyc
#src/Makefile.in
stamp-h1
test-driver
external/standard-RAxML/raxmlHPC
external/standard-RAxML/raxmlHPC-SSE3
python/build/scripts-2.7/gubbins_drawer.py
python/build/scripts-2.7/run_gubbins.py
src/run_all_tests.log
src/run_all_tests.trs
src/test-suite.log
tests/data/one_recombination.tre
tests/data/one_recombination.tre.branch_snps.tab
tests/data/one_recombination.tre.gff
tests/data/one_recombination.tre.phylip
tests/data/one_recombination.tre.snp_sites.aln
tests/data/one_recombination.tre.stats
tests/data/one_recombination.tre.tab
tests/data/one_recombination.tre.vcf
python/build/lib/gubbins/__init__.py
python/build/lib/gubbins/common.py
external/fastml/programs/fastml/fastml
external/fasttree/FastTree