Revision d90aa7f62a414afdadf1f42f137968bad48e13c9 authored by Joost van Griethuysen on 31 January 2019, 09:45:10 UTC, committed by Joost van Griethuysen on 31 January 2019, 11:10:27 UTC
Add a new switch in PyRadiomics commandline entrypoint: `--mode`, `-m`, which takes either `segment` (default) or `voxel`. Add a new switch in PyRadiomics commandline entrypoint: `--out-dir`, `-od`, which specifies a directory (created if not exists) where featuremaps (mode `voxel`) or intermediate files (mode `segment`) are stored. If not specified, featuremaps are stored in the current working directory and intermediate files are not stored. Refactor the commandline parsing and running of PyRadiomics. Allow adding diagnositic info to the output when extracting voxel-based features. After extracting features in a case, results are split into featuremaps, which are stored as SimpleITK images and non-features, which are processed as the output of segment-based extraction.
1 parent e6bef34
| File | Mode | Size |
|---|---|---|
| .circleci | ||
| bin | ||
| conda | ||
| data | ||
| docker | ||
| docs | ||
| examples | ||
| hooks | ||
| labs | ||
| notebooks | ||
| radiomics | ||
| tests | ||
| .dockerignore | -rw-r--r-- | 6 bytes |
| .editorconfig | -rw-r--r-- | 440 bytes |
| .flake8 | -rw-r--r-- | 1.2 KB |
| .gitattributes | -rw-r--r-- | 35 bytes |
| .gitignore | -rw-r--r-- | 763 bytes |
| .travis.yml | -rw-r--r-- | 2.0 KB |
| CHANGES.rst | -rw-r--r-- | 39.1 KB |
| CONTRIBUTING.rst | -rw-r--r-- | 5.8 KB |
| Dockerfile | -rw-r--r-- | 3.0 KB |
| LICENSE.txt | -rw-r--r-- | 1.4 KB |
| MANIFEST.in | -rw-r--r-- | 639 bytes |
| README.md | -rw-r--r-- | 7.6 KB |
| appveyor.yml | -rw-r--r-- | 2.1 KB |
| requirements-dev.txt | -rw-r--r-- | 89 bytes |
| requirements-setup.txt | -rw-r--r-- | 13 bytes |
| requirements.txt | -rw-r--r-- | 86 bytes |
| scikit-ci.yml | -rw-r--r-- | 1.5 KB |
| setup.cfg | -rw-r--r-- | 223 bytes |
| setup.py | -rw-r--r-- | 3.7 KB |
| versioneer.py | -rw-r--r-- | 67.0 KB |
Computing file changes ...
