| dc7b7b5 | Daniel P Howrigan | 19 August 2021, 17:02:44 UTC | Added variant order fix for 186 files to change log | 19 August 2021, 17:02:44 UTC |
| 324396e | Daniel P Howrigan | 18 August 2021, 19:14:22 UTC | Update README.md | 18 August 2021, 19:14:22 UTC |
| 66d2ced | Daniel P Howrigan | 13 April 2021, 12:44:02 UTC | Update README.md | 13 April 2021, 12:44:02 UTC |
| f4085fc | Daniel P Howrigan | 29 March 2021, 18:22:09 UTC | Add files via upload Added original UKB genetic data description file | 29 March 2021, 18:22:09 UTC |
| dc24517 | Daniel P Howrigan | 09 February 2021, 19:08:09 UTC | Create README.md | 09 February 2021, 19:08:09 UTC |
| 928c26f | Daniel P Howrigan | 28 January 2021, 14:30:13 UTC | Update README.md | 28 January 2021, 14:30:13 UTC |
| 6728938 | Daniel P Howrigan | 04 February 2020, 17:55:03 UTC | Merge pull request #30 from hammer/patch-1 Fix typo in v2 README | 04 February 2020, 17:55:03 UTC |
| 51e037c | Jeff Hammerbacher | 04 February 2020, 04:32:57 UTC | Fix typo in v2 README | 04 February 2020, 04:32:57 UTC |
| 4899ec9 | howrigan | 29 January 2020, 20:00:32 UTC | updated README | 29 January 2020, 20:00:32 UTC |
| 8672028 | howrigan | 19 December 2019, 15:44:16 UTC | updated MAF cutoff | 19 December 2019, 15:44:16 UTC |
| b5023d6 | howrigan | 19 December 2019, 15:43:07 UTC | added README | 19 December 2019, 15:43:07 UTC |
| 48e8f3e | howrigan | 19 December 2019, 15:38:31 UTC | updated MAF cutoff | 19 December 2019, 15:38:31 UTC |
| fc4268a | howrigan | 19 December 2019, 15:38:07 UTC | added README | 19 December 2019, 15:38:07 UTC |
| 95ac260 | howrigan | 18 October 2019, 20:21:11 UTC | updated Change Log in README | 18 October 2019, 20:21:11 UTC |
| 4b6fe53 | howrigan | 16 October 2019, 14:25:21 UTC | updated README | 16 October 2019, 14:25:21 UTC |
| 4270f9d | Daniel P Howrigan | 11 October 2019, 19:33:10 UTC | Merge pull request #19 from Nealelab/ldsc_export_0.2 Ldsc export 0.2 | 11 October 2019, 19:33:10 UTC |
| c2531f2 | howrigan | 09 October 2019, 16:22:49 UTC | change log added to README | 09 October 2019, 16:22:49 UTC |
| 8966922 | howrigan | 09 October 2019, 16:15:43 UTC | change log added to README | 09 October 2019, 16:15:43 UTC |
| 0b1fb03 | howrigan | 09 October 2019, 15:51:09 UTC | change log added to README | 09 October 2019, 15:51:09 UTC |
| fee43ed | howrigan | 09 October 2019, 15:50:26 UTC | Rscript to update low-confidence filter | 09 October 2019, 15:50:26 UTC |
| a28d7ce | howrigan | 09 October 2019, 15:49:37 UTC | list of 111 summary stat files where low confidence filter was mis-applied | 09 October 2019, 15:49:37 UTC |
| 28f0db0 | howrigan | 13 September 2019, 19:12:14 UTC | added README | 13 September 2019, 19:12:14 UTC |
| 5691bcf | rkwalters | 07 August 2019, 01:05:19 UTC | remove execute permissions | 07 August 2019, 01:05:19 UTC |
| 4ae9fbc | rkwalters | 07 August 2019, 00:59:41 UTC | document 0.1 version of ldsc keytable (prereq to export script) | 07 August 2019, 00:59:41 UTC |
| d58725a | rkwalters | 07 August 2019, 00:57:28 UTC | create prereq reference files for ldsc export in 0.2 | 07 August 2019, 00:57:28 UTC |
| 0c7d4f8 | rkwalters | 07 August 2019, 00:55:04 UTC | ldsc export script for biomarkers in 0.2 | 07 August 2019, 00:55:04 UTC |
| 68226a2 | howrigan | 08 July 2019, 19:40:25 UTC | updated variant QC section in README | 08 July 2019, 19:40:25 UTC |
| e87e49f | Liam Abbott | 27 June 2019, 15:35:31 UTC | Merge pull request #18 from liameabbott/liam-updates irnt script | 27 June 2019, 15:35:31 UTC |
| 1c4115c | Liam Abbott | 27 June 2019, 15:35:09 UTC | irnt script | 27 June 2019, 15:35:09 UTC |
| 9cd8235 | Liam Abbott | 25 June 2019, 20:29:58 UTC | Merge pull request #17 from liameabbott/liam-updates remove extra scripts | 25 June 2019, 20:29:58 UTC |
| de588ef | Liam Abbott | 25 June 2019, 20:29:19 UTC | remove extra scripts | 25 June 2019, 20:29:19 UTC |
| 8f8ee45 | Liam Abbott | 25 June 2019, 13:33:07 UTC | Merge pull request #15 from lfrancioli/patch-1 Update README.md | 25 June 2019, 13:33:07 UTC |
| 9c3dab4 | Liam Abbott | 25 June 2019, 13:32:29 UTC | Merge pull request #16 from liameabbott/liam-updates beginning code conversion to 0.2 | 25 June 2019, 13:32:29 UTC |
| f3bd9f3 | Liam Abbott | 25 June 2019, 13:28:27 UTC | updates | 25 June 2019, 13:28:27 UTC |
| 9ebfefe | Liam Abbott | 13 May 2019, 21:22:26 UTC | rebase | 13 May 2019, 21:22:26 UTC |
| 4e1259f | Liam Abbott | 13 May 2019, 21:18:48 UTC | converting to 0.2 | 13 May 2019, 21:19:36 UTC |
| 3bb688c | Daniel P Howrigan | 10 February 2019, 14:53:52 UTC | Merge pull request #14 from lfrancioli/manhattan_update Updated Manhattan_plot.R: ~200x less memory, ~5x faster, works on Mac | 10 February 2019, 14:53:52 UTC |
| d831d44 | Laurent Francioli | 01 February 2019, 21:32:27 UTC | Update README.md Fixed links | 01 February 2019, 21:32:27 UTC |
| 216fc6a | laurent | 01 February 2019, 21:17:59 UTC | Updated Manhattan_plot.R: ~200x less memory, ~5x faster, works on Mac | 01 February 2019, 21:17:59 UTC |
| 91c29cb | Liam Abbott | 29 August 2018, 14:24:23 UTC | Merge pull request #12 from liameabbott/master added script selecting European ancestry samples | 29 August 2018, 14:24:23 UTC |
| 205ca16 | Liam Abbott | 29 August 2018, 14:21:56 UTC | added script selecting European ancestry samples | 29 August 2018, 14:22:56 UTC |
| 608637f | howrigan | 01 August 2018, 13:27:24 UTC | updated README | 01 August 2018, 13:27:24 UTC |
| 5bbb087 | rkwalters | 03 May 2018, 15:09:12 UTC | change HM3 file to preemptively remove MHC for ldsc | 03 May 2018, 15:09:12 UTC |
| 5dcf7fd | Liam Abbott | 01 May 2018, 18:46:10 UTC | Merge pull request #8 from liameabbott/imputed_v3_gwas removed unnecessary phenosummary table load in ldsc sumstats export | 01 May 2018, 18:46:10 UTC |
| 06564c6 | Liam Abbott | 01 May 2018, 18:45:29 UTC | removed unnecessary phenosummary table load in ldsc sumstats export | 01 May 2018, 18:45:29 UTC |
| 45329ab | Liam Abbott | 01 May 2018, 18:30:40 UTC | Merge pull request #7 from liameabbott/imputed_v3_gwas added ldsc sumstats export (update) | 01 May 2018, 18:30:40 UTC |
| d84d836 | Liam Abbott | 01 May 2018, 18:29:08 UTC | added ldsc sumstats export (update) | 01 May 2018, 18:29:08 UTC |
| 54331a8 | Liam Abbott | 01 May 2018, 18:26:50 UTC | Merge pull request #6 from liameabbott/imputed_v3_gwas added ldsc sumstats export | 01 May 2018, 18:26:50 UTC |
| e79abe3 | Liam Abbott | 01 May 2018, 18:26:05 UTC | added ldsc sumstats export | 01 May 2018, 18:26:05 UTC |
| 5d92ca0 | howrigan | 26 April 2018, 02:10:35 UTC | updated README | 26 April 2018, 02:10:35 UTC |
| cf73f3d | howrigan | 26 April 2018, 02:02:59 UTC | updated README | 26 April 2018, 02:02:59 UTC |
| 31677a1 | howrigan | 26 April 2018, 02:01:54 UTC | updated README | 26 April 2018, 02:01:54 UTC |
| 59a3333 | howrigan | 26 April 2018, 01:59:30 UTC | updated README | 26 April 2018, 01:59:30 UTC |
| 9c8b557 | Liam Abbott | 23 April 2018, 14:13:34 UTC | Merge pull request #5 from liameabbott/imputed_v3_gwas Imputed v3 gwas | 23 April 2018, 14:13:34 UTC |
| f322e65 | Liam Abbott | 23 April 2018, 14:11:33 UTC | update | 23 April 2018, 14:11:33 UTC |
| d3ffa13 | Liam Abbott | 23 April 2018, 14:10:09 UTC | update | 23 April 2018, 14:10:09 UTC |
| cf52b67 | Liam Abbott | 23 April 2018, 14:09:31 UTC | Merge pull request #4 from liameabbott/imputed_v3_gwas Imputed v3 gwas | 23 April 2018, 14:09:31 UTC |
| b0895ee | Liam Abbott | 23 April 2018, 14:08:56 UTC | update | 23 April 2018, 14:08:56 UTC |
| f706c63 | Liam Abbott | 23 April 2018, 14:08:20 UTC | updatE | 23 April 2018, 14:08:20 UTC |
| 8e4bc8d | Liam Abbott | 23 April 2018, 12:53:00 UTC | update | 23 April 2018, 12:53:00 UTC |
| 588fc97 | Liam Abbott | 21 April 2018, 16:35:23 UTC | update | 21 April 2018, 16:35:23 UTC |
| 3e6ec21 | Liam Abbott | 18 April 2018, 18:54:57 UTC | updated README | 18 April 2018, 18:54:57 UTC |
| 8dfc5e7 | Liam Abbott | 18 April 2018, 18:27:09 UTC | new round of gwas | 18 April 2018, 18:27:09 UTC |
| 3b56b2d | howrigan | 24 January 2018, 17:28:27 UTC | updated README | 24 January 2018, 17:28:27 UTC |
| 2331626 | howrigan | 24 January 2018, 17:23:11 UTC | updated README | 24 January 2018, 17:23:11 UTC |
| 02058fd | Liam Abbott | 28 September 2017, 15:29:57 UTC | Update run_single_phenotype.py | 28 September 2017, 15:29:57 UTC |
| 7932460 | Liam Abbott | 25 September 2017, 18:06:39 UTC | readme typo again | 25 September 2017, 18:06:39 UTC |
| 4547113 | Liam Abbott | 25 September 2017, 18:05:20 UTC | readme typo | 25 September 2017, 18:05:20 UTC |
| 7d63be1 | Liam Abbott | 25 September 2017, 18:03:40 UTC | Merge pull request #2 from Nealelab/liam-single-phenotype added script for single phenotype association | 25 September 2017, 18:03:40 UTC |
| 33fc4e1 | Liam Abbott | 25 September 2017, 18:02:12 UTC | added script for single phenotype association | 25 September 2017, 18:02:12 UTC |
| 8a6e230 | howrigan | 25 September 2017, 16:32:44 UTC | added Manhattan and QQ plotting scripts for single summary stat file | 25 September 2017, 16:32:44 UTC |
| 59433f8 | howrigan | 25 September 2017, 16:29:53 UTC | added Manhattan and QQ plotting scripts for single summary stat file | 25 September 2017, 16:29:53 UTC |
| dd13590 | howrigan | 25 September 2017, 16:28:44 UTC | added Manhattan and QQ plotting scripts for single summary stat file | 25 September 2017, 16:28:44 UTC |
| 3f2be23 | howrigan | 25 September 2017, 16:26:38 UTC | added Manhattan and QQ plotting scripts for single summary stat file | 25 September 2017, 16:26:38 UTC |
| e7201ac | howrigan | 21 September 2017, 16:03:32 UTC | updated summary stat output in README | 21 September 2017, 16:03:32 UTC |
| 8902c3a | howrigan | 21 September 2017, 16:01:31 UTC | updated summary stat output in README | 21 September 2017, 16:01:31 UTC |
| bc8821a | howrigan | 21 September 2017, 16:00:24 UTC | updated summary stat output in README | 21 September 2017, 16:00:24 UTC |
| fddc984 | howrigan | 21 September 2017, 15:57:31 UTC | updated summary stat output in README | 21 September 2017, 15:57:31 UTC |
| 257373e | howrigan | 21 September 2017, 15:52:44 UTC | updated summary stat output in README | 21 September 2017, 15:52:44 UTC |
| d1df467 | Liam Abbott | 21 September 2017, 14:15:23 UTC | Update README.md | 21 September 2017, 14:15:23 UTC |
| 69af39e | howrigan | 16 August 2017, 21:10:15 UTC | updated README | 16 August 2017, 21:10:15 UTC |
| 7030bee | Liam Abbott | 11 August 2017, 18:10:50 UTC | revert previous | 11 August 2017, 18:10:50 UTC |
| 174a020 | Liam Abbott | 11 August 2017, 17:23:58 UTC | added quote to file import | 11 August 2017, 17:23:58 UTC |
| 0e37827 | astheeggeggs | 11 August 2017, 15:25:56 UTC | ugh, committed over Dan's changes | 11 August 2017, 15:25:56 UTC |
| 92ca088 | astheeggeggs | 11 August 2017, 15:22:31 UTC | ugh, committed over Dan's changes.... | 11 August 2017, 15:22:31 UTC |
| c0827c3 | astheeggeggs | 11 August 2017, 15:13:45 UTC | Added some PHESANT notes | 11 August 2017, 15:13:45 UTC |
| 9aa133b | howrigan | 11 August 2017, 13:58:18 UTC | updated README | 11 August 2017, 13:58:18 UTC |
| 7e5645c | Liam Abbott | 10 August 2017, 21:02:02 UTC | Update README.md | 10 August 2017, 21:02:02 UTC |
| 5c9f24f | Liam Abbott | 10 August 2017, 20:58:19 UTC | Update README.md | 10 August 2017, 20:58:19 UTC |
| 9a7c4c5 | Liam Abbott | 10 August 2017, 20:52:48 UTC | Merge pull request #1 from Nealelab/liam-add-scripts Added scripts for running UKBB associations. | 10 August 2017, 20:52:48 UTC |
| 340d690 | Liam Abbott | 10 August 2017, 20:51:46 UTC | added scripts | 10 August 2017, 20:52:06 UTC |
| 01226bb | Liam Abbott | 10 August 2017, 18:56:26 UTC | adding scripts | 10 August 2017, 20:52:06 UTC |
| 4038b65 | Liam Abbott | 10 August 2017, 20:32:46 UTC | Update README.md | 10 August 2017, 20:32:46 UTC |
| 8bce688 | Liam Abbott | 10 August 2017, 20:32:16 UTC | Update README.md | 10 August 2017, 20:32:16 UTC |
| c8ba85b | Liam Abbott | 10 August 2017, 20:31:45 UTC | Update README.md | 10 August 2017, 20:31:45 UTC |
| ea8f59f | howrigan | 10 August 2017, 20:18:00 UTC | updated README | 10 August 2017, 20:18:00 UTC |
| 04831a1 | howrigan | 10 August 2017, 20:06:04 UTC | updated README | 10 August 2017, 20:06:04 UTC |
| fdd899c | howrigan | 10 August 2017, 20:04:26 UTC | updated README | 10 August 2017, 20:04:26 UTC |
| bb5451c | Liam Abbott | 10 August 2017, 19:47:07 UTC | Update README.md | 10 August 2017, 19:47:07 UTC |
| 14e7aa7 | Liam Abbott | 10 August 2017, 19:02:13 UTC | Update README.md | 10 August 2017, 19:02:13 UTC |
