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Revision e015f875e0e234b7abbadb4b7dec8c3e739c40f4 authored by Alexey Sergushichev on 11 December 2014, 19:32:33 UTC, committed by Alexey Sergushichev on 11 December 2014, 19:32:33 UTC 
Merge pull request #1 from ctlab/bedtools
 
Using bedtools to fix multimappers
2 parent s 42a8b75 + 5a1d5f3
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setup.py 
from setuptools import setup

setup(name='quant3p',
      version='0.1',
      description='Tools to do 3\' RNA-seq quantification',
      url='http://github.com/ctlab/quant3p',
      author='Alexey Sergushichev',
      author_email='alserg@rain.ifmo.ru',
      license='Apache2',
      packages=['quant3p'],
      install_requires=[
          'HTSeq',
          'pysam',
          'pybedtools >= 0.6.9',
          'macs2 >= 2.1.0'
          ],
      scripts=['bin/macs2-stranded', 'bin/quant3p'],
      entry_points = {
          'console_scripts': [
              'fix-mm=quant3p.fixmm:main',
              'gtf-extend=quant3p.gtfextend:main'],
          },
      zip_safe=False)
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