| e108cfa | Lijie Han | 19 July 2007, 18:37:13 UTC | M trunk/CitcomS/Coupler/MultiE_Coupler.py M trunk/CitcomS/Coupler/__init__.py M trunk/CitcomS/Coupler/EmbeddedCoupler.py M trunk/CitcomS/Coupler/MultiC_Coupler.py M trunk/CitcomS/Solver/CoupledSolver.py M trunk/CitcomS/Controller.py M trunk/CitcomS/MultiCoupledApp.py solved the synchronization issue. There are some bugs in the log of time. | 19 July 2007, 18:37:13 UTC |
| 4e60f5e | Lijie Han | 18 July 2007, 23:06:35 UTC | A Coupler/MultiE_Coupler.py M Coupler/MultiC_Coupler.py Fixed the synchronization part. Need to test on it. Now Embedded Couplers will wait until containing coupler make a decision. | 18 July 2007, 23:06:35 UTC |
| b639d7b | Eh Tan | 18 July 2007, 21:01:09 UTC | Unify bin/citcoms with bin/coupledcitcoms scripts. Users can run 'bin/citcoms --coupled' to launch a coupled run and 'bin/citcoms --multicoupled' to launch a multicoupled run. | 18 July 2007, 21:01:09 UTC |
| 0f29122 | Eh Tan | 17 July 2007, 22:49:10 UTC | An input file for multicoupled run | 17 July 2007, 22:49:10 UTC |
| 6ff6d36 | Eh Tan | 17 July 2007, 22:48:51 UTC | Fixed a few typos and attached MultiC_Coupler as the default factory for the ccoupler facility | 17 July 2007, 22:48:51 UTC |
| c72dd9f | Eh Tan | 17 July 2007, 22:48:26 UTC | Simplified the MultiC_*Solver classes | 17 July 2007, 22:48:26 UTC |
| 3b731ec | Lijie Han | 16 July 2007, 23:45:52 UTC | A Solver/MultiC_RegionalSolver.py A Solver/MultiC_FullSolver.py A Solver/MultiC_Solver.py ideally these files works as the solvers I needed for the project. | 16 July 2007, 23:45:52 UTC |
| 85be698 | Lijie Han | 16 July 2007, 21:21:10 UTC | M CitcomS/MultiLayout.py trivial comment change M CitcomS/Coupler/MultiC_Coupler.py a nearly complete version. Although I am not sure how most of the things works , I managed to create a copy of everything.initTemperature, restartTemperature , and modifyT not defined. | 16 July 2007, 21:21:10 UTC |
| 690124c | Lijie Han | 13 July 2007, 23:24:27 UTC | M Coupler/ContainingCoupler.py trivial modification on comments | 13 July 2007, 23:24:27 UTC |
| 6569f99 | Lijie Han | 13 July 2007, 23:23:43 UTC | M Coupler/MultiC_Coupler.py add __init__, initialize, createMesh some of createMesh are commented out because I do not understand it. | 13 July 2007, 23:23:43 UTC |
| 313ee04 | Lijie Han | 13 July 2007, 21:09:27 UTC | A Coupler/MultiC_Coupler.py It's a child of Containing Coupler It has nothing now. | 13 July 2007, 21:09:27 UTC |
| 8c2b9ce | Eh Tan | 11 July 2007, 20:17:32 UTC | Added some comments | 11 July 2007, 20:17:32 UTC |
| d9f6e03 | Eh Tan | 10 July 2007, 20:08:44 UTC | Renamed variables for clarification | 10 July 2007, 20:08:44 UTC |
| c1c6dd3 | Eh Tan | 09 July 2007, 22:03:45 UTC | Small changes in *Coupler class. * consolidated __init__() and initialize() * renamed numSrc -> remoteSize, boundary -> remoteBdryList, interior -> remoteIntrList * defaulted the dimensional and transformational properties to False | 09 July 2007, 22:03:45 UTC |
| 64a5133 | Eh Tan | 06 July 2007, 20:48:44 UTC | Added svn:keywords Id | 06 July 2007, 20:48:44 UTC |
| bcff7e0 | Eh Tan | 06 July 2007, 20:46:10 UTC | Debugged MultiLayout.initialize() and MultiCoupledApp.findLayout(). Fixed some typos. | 06 July 2007, 20:46:10 UTC |
| 2931729 | Eh Tan | 06 July 2007, 18:00:49 UTC | Using log() instead of line() to flush the journal buffer, otherwise no output at all. | 06 July 2007, 18:00:49 UTC |
| ccf633e | Lijie Han | 06 July 2007, 17:50:59 UTC | fix myPlus and remotePlus and report in MultiCoupledApp edit some comments in MultiLayout | 06 July 2007, 17:50:59 UTC |
| 4bc84ca | Lijie Han | 05 July 2007, 23:45:19 UTC | add MultiLayout not sure about number of processor, currently assign 1-10 for ccom 11 for ecom1, and 12 for ecom2 | 05 July 2007, 23:45:19 UTC |
| 9126f66 | Lijie Han | 05 July 2007, 22:36:06 UTC | | 05 July 2007, 22:36:06 UTC |
| f54025a | Lijie Han | 05 July 2007, 20:49:14 UTC | | 05 July 2007, 20:49:14 UTC |
| a4173da | Lijie Han | 04 July 2007, 00:02:42 UTC | a draft for multicoupled application | 04 July 2007, 00:02:42 UTC |
| 3b48492 | Eh Tan | 02 July 2007, 22:21:36 UTC | Removing outdated and redundant documentation | 02 July 2007, 22:21:36 UTC |
| 0eb8131 | Eh Tan | 02 July 2007, 22:21:21 UTC | Using log() instead of line() to flush the journal buffer, otherwise no output at all. | 02 July 2007, 22:21:21 UTC |
| a1c3da7 | Eh Tan | 28 June 2007, 19:35:29 UTC | Renamed ccomm -> containing_group and ecomm -> embedded_group. Added more checks to the groups | 28 June 2007, 19:35:29 UTC |
| 0ef55d1 | Eh Tan | 27 June 2007, 01:04:41 UTC | Added/updated a bunch of comments, renamed variables | 27 June 2007, 01:04:41 UTC |
| 36f8d4f | Eh Tan | 26 June 2007, 00:37:32 UTC | Added mime-type property to the PDF files | 26 June 2007, 00:37:32 UTC |
| 9dddcd2 | Eh Tan | 23 June 2007, 00:33:20 UTC | Giving Exchanger/Coupler/CoupledApp as new life. The testing script tests/coupled.cfg finished successfully. | 23 June 2007, 00:33:20 UTC |
| 54685e2 | Eh Tan | 23 June 2007, 00:30:33 UTC | Useful debuggin output, but disabled | 23 June 2007, 00:30:33 UTC |
| 34b601d | Eh Tan | 23 June 2007, 00:29:36 UTC | Print CXX and CXXFLAGS after finishing configure | 23 June 2007, 00:29:36 UTC |
| 55c8dd2 | Eh Tan | 23 June 2007, 00:28:23 UTC | Removed the back-and-forth interpolation of viscosity, which smoothes the viscosity field unnecessarily | 23 June 2007, 00:28:23 UTC |
| ed4ce7b | Eh Tan | 22 June 2007, 23:43:21 UTC | Forgot to commit module/setProperties.c in r7289. This should fix issue115 in the pyre version also. | 22 June 2007, 23:43:21 UTC |
| 1069325 | Leif Strand | 22 June 2007, 04:36:08 UTC | Added BuildBot config. | 22 June 2007, 04:36:08 UTC |
| fcdc999 | Lijie Han | 21 June 2007, 22:35:33 UTC | Resolved the conflict | 21 June 2007, 22:35:33 UTC |
| 6e82004 | Eh Tan | 21 June 2007, 22:25:40 UTC | Preparing a conflict test, again | 21 June 2007, 22:25:40 UTC |
| 3d9403f | Eh Tan | 21 June 2007, 22:22:08 UTC | Preparing a conflict test, again | 21 June 2007, 22:22:08 UTC |
| 0a261b2 | Eh Tan | 21 June 2007, 22:19:44 UTC | Preparing a conflict test | 21 June 2007, 22:19:44 UTC |
| a2f4ad6 | Eh Tan | 18 June 2007, 23:21:10 UTC | Renamed 'XXX1' -> 'cXXX' and 'XXX2' -> 'eXXX' | 18 June 2007, 23:21:10 UTC |
| e546ce6 | Eh Tan | 18 June 2007, 23:06:40 UTC | Fixing issue115: interference between restart=1 & tracer_ic_method Previously, when "restart" is set, tracer_ic_method will be set to 2 (restart tracers) by the code. Now, these two options are independent. | 18 June 2007, 23:06:40 UTC |
| fe97c4c | Leif Strand | 15 June 2007, 18:01:27 UTC | Fix for problem with GCC 3.4.5 (observed on CITerra): mv: cannot stat `.deps/dummy.Tpo': No such file or directory | 15 June 2007, 18:01:27 UTC |
| d839465 | Eh Tan | 14 June 2007, 21:38:19 UTC | Zeroing geoid arrays before every geoid calculation. This fixes issue114 | 14 June 2007, 21:38:19 UTC |
| 7384d4c | Eh Tan | 14 June 2007, 17:55:31 UTC | A better fix for issue110 | 14 June 2007, 17:55:31 UTC |
| 25bb6b1 | Eh Tan | 14 June 2007, 01:36:27 UTC | Fixing issue111: Expanding %RANK in autocombine.py | 14 June 2007, 01:36:27 UTC |
| 9c3dfa7 | Lijie Han | 13 June 2007, 17:55:22 UTC | A trivial change | 13 June 2007, 17:55:22 UTC |
| 65ee539 | Eh Tan | 12 June 2007, 00:05:11 UTC | Fixing issue112 | 12 June 2007, 00:05:11 UTC |
| 50c2d55 | Leif Strand | 11 May 2007, 20:19:28 UTC | Fixed LINK problem w/Automake. | 11 May 2007, 20:19:28 UTC |
| 9caddf1 | Leif Strand | 11 May 2007, 02:02:00 UTC | Build with Exchanger, if available. The Exchanger package will be automatically detected if it is installed on your PYTHONPATH. The preprocessor & link flags for compiling/linking with Exchanger are handled automatically. To my chagrin, this change increases the CitcomS language count back up to 3 again (C, C++, Python). Even with the aid of the 'cproto' tool, it would take many hours of work to make the C code in 'lib' compile using a C++ compiler. | 11 May 2007, 02:02:00 UTC |
| 6019291 | Eh Tan | 11 April 2007, 00:40:49 UTC | Forgot to update the makefile in r6541 | 11 April 2007, 00:40:49 UTC |
| 60030f4 | Eh Tan | 10 April 2007, 21:59:45 UTC | Finding the min/max of the Cartesian coordinates. The min/max values provide the bounding box for random tracer generation. This will speed up the tracer generation, and should avoid a potential problem of "too many tries?" error when the domain size of a processor is much smaller (<1%) than the size of the whole sphere. | 10 April 2007, 21:59:45 UTC |
| 247bcc7 | Eh Tan | 10 April 2007, 21:58:51 UTC | Removed obsolete pyre components in tests/ | 10 April 2007, 21:58:51 UTC |
| 6d942e7 | Eh Tan | 05 April 2007, 22:21:46 UTC | Adding the ability to combine optional fields to the post-processing scripts. autocombine.py will read the parameter 'output_optional' from the cfg file and combine the optional fields (can be pressure, stress, comp_nd, or a combination of the three) into a file. The file is named similar to the cap file, with 'cap' replaced by 'opt'. A .general file is also created, which describes the content, shape, and structure of the opt file. | 05 April 2007, 22:21:46 UTC |
| f31b73c | Sue Kientz | 27 March 2007, 20:54:47 UTC | standardized typefaces on cover | 27 March 2007, 20:54:47 UTC |
| d7a7f7a | Sue Kientz | 27 March 2007, 06:51:53 UTC | changed version to 2.2.1 per tan2 | 27 March 2007, 06:51:53 UTC |
| 78e36d1 | Eh Tan | 27 March 2007, 04:39:34 UTC | Regenerated ChangeLog upto r6417 | 27 March 2007, 04:39:34 UTC |
| 190e4e8 | Eh Tan | 27 March 2007, 04:37:54 UTC | Updated NEWS for the upcoming 2.2.1 | 27 March 2007, 04:37:54 UTC |
| 1ab1ba9 | Eh Tan | 27 March 2007, 04:20:05 UTC | Forgot to add cookbook7.cfg to the file list | 27 March 2007, 04:20:05 UTC |
| d1623a6 | Eh Tan | 26 March 2007, 18:48:36 UTC | Regenerated ChangeLog upto r6409 | 26 March 2007, 18:48:36 UTC |
| 074e8d9 | Eh Tan | 26 March 2007, 18:45:16 UTC | Forgot to add a header file to the file list | 26 March 2007, 18:45:16 UTC |
| 585244b | Eh Tan | 26 March 2007, 18:25:42 UTC | Regenerated ChangeLog upto r6403 | 26 March 2007, 18:25:42 UTC |
| e8056e6 | Eh Tan | 26 March 2007, 18:20:19 UTC | Set the length unit to cm to fit within the page | 26 March 2007, 18:20:19 UTC |
| c7236d2 | Eh Tan | 26 March 2007, 18:11:02 UTC | Changed the size of gmt plots to fit within the page | 26 March 2007, 18:11:02 UTC |
| 8ccaa32 | Sue Kientz | 26 March 2007, 18:05:31 UTC | restored edits to stable copy; regen pdf, images showing | 26 March 2007, 18:05:31 UTC |
| 3b056f3 | Eh Tan | 26 March 2007, 06:01:18 UTC | Enlarged the figure of cookbook7. Rephrased the description of the low-viscosity-zone parameters, per Sue's suggestion. | 26 March 2007, 06:01:18 UTC |
| d79404c | Sue Kientz | 26 March 2007, 00:23:55 UTC | chasing down image problem | 26 March 2007, 00:23:55 UTC |
| 6f388ea | Sue Kientz | 25 March 2007, 23:07:31 UTC | changed verbage in History 1.2, paragraphs on version 2.1, to past tense, since notes on 2.2 should be only ones in present tense \c | 25 March 2007, 23:07:31 UTC |
| 723f757 | Sue Kientz | 25 March 2007, 22:55:42 UTC | edits of new copy; attempt to fix an image that is not displaying, still unresolved | 25 March 2007, 22:55:42 UTC |
| 8688ee2 | Eh Tan | 24 March 2007, 23:05:03 UTC | Finished Cookbook7 | 24 March 2007, 23:05:03 UTC |
| 0a6d3bd | Eh Tan | 24 March 2007, 23:03:00 UTC | Changed the version number to 2.2 | 24 March 2007, 23:03:00 UTC |
| 1af6a2d | Eh Tan | 24 March 2007, 00:02:43 UTC | Added new cookbook7 | 24 March 2007, 00:02:43 UTC |
| 3cd5331 | Eh Tan | 23 March 2007, 22:21:32 UTC | Updated the NEWS for v2.2.0 | 23 March 2007, 22:21:32 UTC |
| 5fc07c2 | Eh Tan | 23 March 2007, 22:21:06 UTC | Added new parameter 'adv_gamme' to the manual and input samples. Documented a new tic_method=3 | 23 March 2007, 22:21:06 UTC |
| 1e70a61 | Eh Tan | 23 March 2007, 21:06:06 UTC | Added description to the tracer and composition input/output files | 23 March 2007, 21:06:06 UTC |
| c0753b2 | Eh Tan | 23 March 2007, 20:40:27 UTC | Added the tracer parameters to the manual and sample input files | 23 March 2007, 20:40:27 UTC |
| c50ae40 | Eh Tan | 23 March 2007, 20:39:12 UTC | Disable the parameter "analytical_tracer_test", and make "chemical_buoyancy" a boolean | 23 March 2007, 20:39:12 UTC |
| 2678c56 | Eh Tan | 23 March 2007, 19:37:24 UTC | Added the low-visc-zone parameters to the manual and the sample input files | 23 March 2007, 19:37:24 UTC |
| b4b5b1c | Eh Tan | 23 March 2007, 05:31:39 UTC | Added the image for cookbook7 (thermo-chemical convection | 23 March 2007, 05:31:39 UTC |
| 130bee2 | Eh Tan | 23 March 2007, 05:30:43 UTC | When I renamed the old Cookbook7/ directory to Cookbook6/, I forgot to rename cookbook7.eps to cookbook6.eps. Now it is done. | 23 March 2007, 05:30:43 UTC |
| a2482bb | Eh Tan | 23 March 2007, 05:25:10 UTC | These two EPS files are the leftover of an old cookbook | 23 March 2007, 05:25:10 UTC |
| 801b1bb | Eh Tan | 23 March 2007, 05:22:29 UTC | Gather theta and phi only in get_neighboring_caps() | 23 March 2007, 05:22:29 UTC |
| 6bef184 | Eh Tan | 23 March 2007, 05:21:38 UTC | Changed the header format of comp_* output to be consistent with other data files | 23 March 2007, 05:21:38 UTC |
| da31e1c | Sue Kientz | 22 March 2007, 22:11:02 UTC | added bib entry per eh, changed cover to citcoms (rem .py), changed to 2.2.0, todo notation removed; regen pdf | 22 March 2007, 22:11:02 UTC |
| 3339bf3 | Eh Tan | 22 March 2007, 19:58:11 UTC | Make the output of 1st iteration consistent with later iterations | 22 March 2007, 19:58:11 UTC |
| 8f757ca | Eh Tan | 22 March 2007, 19:57:57 UTC | Calling find_tracers() and count_tracers_of_flavors() in initialize_tracers(), so that the former two functions can become static/private | 22 March 2007, 19:57:57 UTC |
| 1d3cb93 | Eh Tan | 22 March 2007, 19:55:18 UTC | Renamed initialize_tracer_arrays() to allocate_tracer_arrays() | 22 March 2007, 19:55:18 UTC |
| 34b83e1 | Eh Tan | 21 March 2007, 22:46:51 UTC | Updated the version number to 2.2.0 | 21 March 2007, 22:46:51 UTC |
| f1b0e00 | Eh Tan | 21 March 2007, 22:46:34 UTC | Updated the dependency information | 21 March 2007, 22:46:34 UTC |
| c03947b | Eh Tan | 21 March 2007, 22:46:08 UTC | Added chemical Rayleigh number to the equations | 21 March 2007, 22:46:08 UTC |
| ed136d5 | Eh Tan | 21 March 2007, 22:45:51 UTC | Added history of v2.2 release | 21 March 2007, 22:45:51 UTC |
| 9bf807f | Eh Tan | 21 March 2007, 22:45:30 UTC | Added citation to McNamara & Zhong 2004 | 21 March 2007, 22:45:30 UTC |
| 42b79b0 | Eh Tan | 21 March 2007, 19:30:45 UTC | Added a safeguard against nprocx or nprocy greater than 1 | 21 March 2007, 19:30:45 UTC |
| 064cf26 | Eh Tan | 20 March 2007, 06:34:22 UTC | full_lost_souls() now works for nprocz>1 as well | 20 March 2007, 06:34:22 UTC |
| 585d503 | Eh Tan | 20 March 2007, 06:27:56 UTC | Removed the 'tracer_interpolation_scheme' and 'tracer_advection_scheme' parameters | 20 March 2007, 06:27:56 UTC |
| 0860212 | Eh Tan | 20 March 2007, 06:26:19 UTC | Reporting error if low viscosity channel/wedge is turned on, but tracer is turned off | 20 March 2007, 06:26:19 UTC |
| 5812fbe | Eh Tan | 19 March 2007, 23:49:51 UTC | lost_souls() cannot be shared by both versions. The parallel communications of both versions are too different. So, the original lost_souls() is renamed to full_lost_souls(). A new regional_lost_souls() is implemented. This code has been tested in 3x3x3 processors, running over 100 timesteps. The number of total tracers is conserved. | 19 March 2007, 23:49:51 UTC |
| 7c2622b | Eh Tan | 19 March 2007, 23:44:12 UTC | Init'd E->composition.icompositional_rheology to 0 | 19 March 2007, 23:44:12 UTC |
| 086ba84 | Eh Tan | 19 March 2007, 23:42:50 UTC | * Init'd E->composition.icompositional_rheology to 0 * Write composition instruction only if it is turned on * Clean up the code a bit | 19 March 2007, 23:42:50 UTC |
| 3d926d3 | Eh Tan | 19 March 2007, 23:29:00 UTC | Removing read_comp(), which is not used anymore | 19 March 2007, 23:29:00 UTC |
| 4c3acc7 | Eh Tan | 19 March 2007, 23:25:14 UTC | Advect the tracers right after temperature advection, before solving velocity | 19 March 2007, 23:25:14 UTC |
| 0bf6d88 | Eh Tan | 19 March 2007, 23:08:40 UTC | Replaced for-loop by an if, which matchs the intention better | 19 March 2007, 23:08:40 UTC |
| 71b53f2 | Eh Tan | 19 March 2007, 22:53:40 UTC | Init'd advection.timestep and advection.timesteps earlier. The time output uses these parameters. | 19 March 2007, 22:53:40 UTC |
