https://github.com/ctlab/quant3p
Revision e1812b9959de43812977e175404cf10c0cae3fd8 authored by Alexey Sergushichev on 11 June 2016, 11:02:57 UTC, committed by Alexey Sergushichev on 11 June 2016, 11:02:57 UTC
1 parent 8520bce
Tip revision: e1812b9959de43812977e175404cf10c0cae3fd8 authored by Alexey Sergushichev on 11 June 2016, 11:02:57 UTC
working with a single bam
working with a single bam
Tip revision: e1812b9
setup.py
from setuptools import setup
setup(name='quant3p',
version='0.1',
description='Tools to do 3\' RNA-seq quantification',
url='http://github.com/ctlab/quant3p',
author='Alexey Sergushichev',
author_email='alserg@rain.ifmo.ru',
license='Apache2',
packages=['quant3p'],
install_requires=[
'HTSeq',
'pysam',
'pybedtools >= 0.6.9',
'macs2 >= 2.1.0'
],
scripts=['bin/macs2-stranded', 'bin/quant3p'],
entry_points = {
'console_scripts': [
'fix-mm=quant3p.fixmm:main',
'gtf-extend=quant3p.gtfextend:main'],
},
zip_safe=False)
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