| e1fdc88 | puethe | 28 January 2021, 14:35:32 UTC | try with sudo | 28 January 2021, 14:35:32 UTC |
| 1cfccfb | puethe | 28 January 2021, 12:25:17 UTC | get Docker working | 28 January 2021, 12:25:17 UTC |
| 7f00179 | puethe | 27 January 2021, 17:51:51 UTC | update readme/changelog | 27 January 2021, 17:51:51 UTC |
| 21d70c8 | Christoph Püthe | 27 January 2021, 17:18:34 UTC | Merge pull request #291 from nickjcroucher/master Upgrade to version 3.0 | 27 January 2021, 17:18:34 UTC |
| e851a7d | nickjcroucher | 27 January 2021, 10:30:49 UTC | Tidy up installation and version parsing | 27 January 2021, 10:30:49 UTC |
| b740ff2 | nickjcroucher | 27 January 2021, 10:15:13 UTC | Change install prefix | 27 January 2021, 10:15:13 UTC |
| 0dad725 | nickjcroucher | 27 January 2021, 09:58:16 UTC | Try sudo install | 27 January 2021, 09:58:16 UTC |
| 09aad38 | nickjcroucher | 27 January 2021, 09:16:56 UTC | Add make install to testing | 27 January 2021, 09:16:56 UTC |
| 658f284 | nickjcroucher | 27 January 2021, 08:24:38 UTC | Merge version information | 27 January 2021, 08:24:38 UTC |
| 9de5501 | nickjcroucher | 25 January 2021, 21:23:30 UTC | Edit threads argument description | 25 January 2021, 21:24:42 UTC |
| 321a41c | nickjcroucher | 25 January 2021, 21:18:07 UTC | Append to PATH before installation | 25 January 2021, 21:18:07 UTC |
| 206247e | nickjcroucher | 25 January 2021, 20:34:28 UTC | Add to path for package search | 25 January 2021, 20:34:28 UTC |
| 1be1be9 | nickjcroucher | 25 January 2021, 20:22:24 UTC | Remove version from __init__ | 25 January 2021, 20:22:24 UTC |
| 0296e3c | nickjcroucher | 25 January 2021, 19:40:56 UTC | Clarify menu options | 25 January 2021, 19:40:56 UTC |
| 061f8fe | nickjcroucher | 19 January 2021, 22:38:56 UTC | Make raxmlng test more stable | 19 January 2021, 22:38:56 UTC |
| 3f28d80 | nickjcroucher | 19 January 2021, 22:29:40 UTC | Remove downloaded files | 19 January 2021, 22:29:40 UTC |
| 5561236 | nickjcroucher | 19 January 2021, 22:26:59 UTC | apt-get only run with Linux | 19 January 2021, 22:26:59 UTC |
| f1084cd | nickjcroucher | 19 January 2021, 21:51:56 UTC | Change menu options | 19 January 2021, 21:51:56 UTC |
| 737f954 | nickjcroucher | 19 January 2021, 21:10:01 UTC | Improve memory management error message | 19 January 2021, 21:10:01 UTC |
| 2d68315 | nickjcroucher | 19 January 2021, 19:49:15 UTC | Add missing dependencies to installation files | 19 January 2021, 19:49:15 UTC |
| 685b303 | nickjcroucher | 19 January 2021, 19:45:29 UTC | Specify versions in environment.yml | 19 January 2021, 19:45:29 UTC |
| f7253a9 | nickjcroucher | 19 January 2021, 19:40:12 UTC | Remove Makefile.in | 19 January 2021, 19:40:12 UTC |
| fe79e08 | nickjcroucher | 19 January 2021, 19:28:44 UTC | Use shutil to move file | 19 January 2021, 19:28:44 UTC |
| c61069d | nickjcroucher | 07 January 2021, 16:56:22 UTC | Update help message | 07 January 2021, 16:56:22 UTC |
| 4d2d147 | nickjcroucher | 06 January 2021, 09:26:16 UTC | Introduce bootstrapping tests | 06 January 2021, 09:26:16 UTC |
| a1e7de3 | nickjcroucher | 06 January 2021, 08:24:06 UTC | Change names of intermediate files | 06 January 2021, 08:24:06 UTC |
| 11591a4 | nickjcroucher | 05 January 2021, 21:46:13 UTC | Simplify code coverage upload | 05 January 2021, 21:46:13 UTC |
| abe2483 | nickjcroucher | 05 January 2021, 21:25:19 UTC | Update code for selecting RAxML algorithm based on CPU | 05 January 2021, 21:25:48 UTC |
| a976ca0 | nickjcroucher | 05 January 2021, 19:59:39 UTC | Multi-thread tests | 05 January 2021, 19:59:39 UTC |
| 0427cd4 | nickjcroucher | 05 January 2021, 16:43:22 UTC | Fix clean up function | 05 January 2021, 16:43:22 UTC |
| 15c584f | nickjcroucher | 05 January 2021, 16:33:47 UTC | Fix clean up function | 05 January 2021, 16:33:47 UTC |
| 361c175 | nickjcroucher | 05 January 2021, 16:03:48 UTC | Refine clean up function | 05 January 2021, 16:03:48 UTC |
| 65dee2f | nickjcroucher | 05 January 2021, 15:36:49 UTC | Define working directory | 05 January 2021, 15:36:49 UTC |
| 9ed422d | nickjcroucher | 05 January 2021, 14:56:07 UTC | Exit when unable to find suitable RAxML software | 05 January 2021, 14:56:07 UTC |
| ab8df31 | nickjcroucher | 05 January 2021, 14:29:42 UTC | Test for RAxML-specific problems | 05 January 2021, 14:29:42 UTC |
| 8c26c78 | nickjcroucher | 05 January 2021, 12:48:53 UTC | Fix clean up test | 05 January 2021, 12:48:53 UTC |
| e44cbca | nickjcroucher | 05 January 2021, 12:40:52 UTC | Make clean up test verbose | 05 January 2021, 12:40:52 UTC |
| 806b33e | nickjcroucher | 05 January 2021, 12:32:15 UTC | Extra clean up for tests | 05 January 2021, 12:32:15 UTC |
| ba29320 | nickjcroucher | 05 January 2021, 12:03:41 UTC | Extra clean up for tests | 05 January 2021, 12:03:41 UTC |
| 3e22d15 | nickjcroucher | 05 January 2021, 11:36:58 UTC | Make tests give verbose outputs | 05 January 2021, 11:36:58 UTC |
| 1a9af36 | nickjcroucher | 05 January 2021, 11:24:29 UTC | Further fixes to test data paths | 05 January 2021, 11:24:29 UTC |
| a02282b | nickjcroucher | 05 January 2021, 11:01:33 UTC | Change handling of file paths in tests | 05 January 2021, 11:01:33 UTC |
| f866cf2 | nickjcroucher | 05 January 2021, 10:32:27 UTC | Change paths for testing files | 05 January 2021, 10:32:27 UTC |
| ed4190b | nickjcroucher | 05 January 2021, 10:03:26 UTC | Change python testing to use consistent python version | 05 January 2021, 10:03:26 UTC |
| 5ff8e21 | nickjcroucher | 05 January 2021, 09:22:40 UTC | Change coverage calculation for python code | 05 January 2021, 09:22:40 UTC |
| dfb9769 | nickjcroucher | 05 January 2021, 08:55:24 UTC | Fix code coverage command for python tests | 05 January 2021, 08:55:24 UTC |
| 09b057d | nickjcroucher | 05 January 2021, 08:27:19 UTC | Change to python 3.x and fix ambiguous test | 05 January 2021, 08:27:19 UTC |
| 3ffa5d3 | nickjcroucher | 05 January 2021, 06:21:28 UTC | Bump version | 05 January 2021, 06:21:28 UTC |
| c64d103 | nickjcroucher | 05 January 2021, 06:20:44 UTC | Fix null pointer warning in test | 05 January 2021, 06:20:44 UTC |
| 547eca7 | nickjcroucher | 05 January 2021, 06:12:18 UTC | Remove scripts dir reference from makefile | 05 January 2021, 06:12:18 UTC |
| c03e91e | nickjcroucher | 04 January 2021, 22:39:36 UTC | Change version retrieval | 04 January 2021, 22:39:36 UTC |
| ea5190d | nickjcroucher | 04 January 2021, 22:28:07 UTC | Restructure runner script | 04 January 2021, 22:28:07 UTC |
| 48f4f35 | nickjcroucher | 04 January 2021, 22:23:26 UTC | Remove obsolete scripts directory | 04 January 2021, 22:23:26 UTC |
| 594cd56 | nickjcroucher | 04 January 2021, 22:22:26 UTC | Add model fitting tests | 04 January 2021, 22:22:26 UTC |
| cf4f235 | nickjcroucher | 04 January 2021, 16:50:40 UTC | Remove unneeded file | 04 January 2021, 16:50:40 UTC |
| 6364244 | nickjcroucher | 04 January 2021, 16:49:39 UTC | Remove unnecessary import | 04 January 2021, 16:49:39 UTC |
| ffa8a26 | nickjcroucher | 04 January 2021, 16:40:05 UTC | Fix raxmlng model fitting file names | 04 January 2021, 16:40:05 UTC |
| f25fcb9 | nickjcroucher | 04 January 2021, 15:33:57 UTC | Move run_gubbins.py | 04 January 2021, 15:33:57 UTC |
| f53c6bb | nickjcroucher | 04 January 2021, 13:30:45 UTC | Remove codecov command | 04 January 2021, 13:30:45 UTC |
| 2155eec | nickjcroucher | 04 January 2021, 13:26:25 UTC | Add installation of pytest-cov | 04 January 2021, 13:26:25 UTC |
| 110d5d9 | nickjcroucher | 04 January 2021, 13:19:00 UTC | Update codecov settings | 04 January 2021, 13:19:00 UTC |
| ae9a55e | nickjcroucher | 04 January 2021, 11:27:12 UTC | Change version handling | 04 January 2021, 11:27:12 UTC |
| 3b0a52e | nickjcroucher | 04 January 2021, 10:38:58 UTC | Change codecov installation on linux | 04 January 2021, 10:38:58 UTC |
| 109275c | nickjcroucher | 04 January 2021, 10:30:55 UTC | Fix description function | 04 January 2021, 10:30:55 UTC |
| fe5b43e | nickjcroucher | 04 January 2021, 10:30:26 UTC | Change imports into common.py | 04 January 2021, 10:30:26 UTC |
| 65addb6 | nickjcroucher | 04 January 2021, 10:04:22 UTC | Update linux installation commands | 04 January 2021, 10:04:22 UTC |
| 9cda493 | nickjcroucher | 04 January 2021, 10:00:45 UTC | Remove pkg_resources error | 04 January 2021, 10:00:45 UTC |
| b44542e | nickjcroucher | 04 January 2021, 09:57:38 UTC | Restore working linux subunit installation | 04 January 2021, 09:57:38 UTC |
| ecd03cc | nickjcroucher | 04 January 2021, 09:53:55 UTC | Fix environment.yml typo | 04 January 2021, 09:53:55 UTC |
| ff37a7c | nickjcroucher | 04 January 2021, 09:43:20 UTC | Restore pkg_resources as dependency of subunit | 04 January 2021, 09:43:20 UTC |
| d661430 | nickjcroucher | 04 January 2021, 09:36:08 UTC | Update regex search strings | 04 January 2021, 09:36:08 UTC |
| a56dcf9 | nickjcroucher | 04 January 2021, 09:29:08 UTC | Remove pkg_resources dependency | 04 January 2021, 09:29:08 UTC |
| 3110547 | nickjcroucher | 04 January 2021, 09:00:46 UTC | Fix to Debian bug #971111 | 04 January 2021, 09:00:46 UTC |
| 4fb0ee8 | nickjcroucher | 03 January 2021, 22:19:34 UTC | Fix clean up test | 03 January 2021, 22:19:34 UTC |
| befa349 | nickjcroucher | 03 January 2021, 22:05:52 UTC | Update package metadata | 03 January 2021, 22:05:52 UTC |
| 4c5aae6 | nickjcroucher | 03 January 2021, 22:02:40 UTC | Fix prefix for RAxML reconstruction | 03 January 2021, 22:02:40 UTC |
| 662b273 | nickjcroucher | 03 January 2021, 08:51:30 UTC | Pass extra arguments to IQtree builder in test | 03 January 2021, 08:51:30 UTC |
| fa300f1 | nickjcroucher | 03 January 2021, 07:53:21 UTC | Move test file | 03 January 2021, 07:53:21 UTC |
| 7e18174 | nickjcroucher | 02 January 2021, 07:34:57 UTC | Update bifurcation test result | 02 January 2021, 07:34:57 UTC |
| 7bd0c6b | nickjcroucher | 02 January 2021, 07:14:38 UTC | Update comparator for midpoint rooting tests | 02 January 2021, 07:14:38 UTC |
| f16ffae | nickjcroucher | 02 January 2021, 06:55:33 UTC | Make test tree names consistent | 02 January 2021, 06:55:33 UTC |
| e9b5dbd | nickjcroucher | 01 January 2021, 22:50:11 UTC | Change tree_method file names | 01 January 2021, 22:50:11 UTC |
| 406799a | nickjcroucher | 01 January 2021, 17:56:02 UTC | Update test tree builders | 01 January 2021, 17:56:02 UTC |
| 465b58f | nickjcroucher | 01 January 2021, 17:12:29 UTC | Inactivate test for 3 sequences in alignment | 01 January 2021, 17:12:29 UTC |
| 0cf467e | nickjcroucher | 01 January 2021, 17:04:53 UTC | Update expected file outputs | 01 January 2021, 17:04:53 UTC |
| 04041d0 | nickjcroucher | 01 January 2021, 17:04:18 UTC | Remove obsolete tests | 01 January 2021, 17:04:18 UTC |
| 94de227 | nickjcroucher | 01 January 2021, 16:19:22 UTC | Test how many errors are due to version not being established | 01 January 2021, 16:19:22 UTC |
| e94ccfd | nickjcroucher | 01 January 2021, 16:11:24 UTC | Merge pull request #12 from nickjcroucher/ci_switch Change CI to Github Actions | 01 January 2021, 16:11:24 UTC |
| 749123e | nickjcroucher | 01 January 2021, 16:09:34 UTC | Prepare for merge with master | 01 January 2021, 16:09:34 UTC |
| 449e9c1 | nickjcroucher | 01 January 2021, 16:05:14 UTC | Remove unnecessary packages | 01 January 2021, 16:05:14 UTC |
| 542ca73 | nickjcroucher | 01 January 2021, 07:27:15 UTC | Fix cppunit installation | 01 January 2021, 07:27:15 UTC |
| 6ffe0c1 | nickjcroucher | 01 January 2021, 07:17:48 UTC | Restore cppunit installation | 01 January 2021, 07:17:48 UTC |
| e8a24ca | nickjcroucher | 01 January 2021, 07:10:50 UTC | Restore cppunit Linux installation | 01 January 2021, 07:10:50 UTC |
| 4a72cc7 | nickjcroucher | 01 January 2021, 07:05:54 UTC | Edit flags for cppunit Linux installation | 01 January 2021, 07:05:54 UTC |
| 76b8b82 | nickjcroucher | 01 January 2021, 07:01:44 UTC | Edit flags for Linux installation | 01 January 2021, 07:01:44 UTC |
| 5600957 | nickjcroucher | 01 January 2021, 06:52:50 UTC | Remove rendundancy in installation | 01 January 2021, 06:52:50 UTC |
| b36a23b | nickjcroucher | 31 December 2020, 10:35:33 UTC | Change flags to autoconfigure for Linux | 31 December 2020, 10:35:33 UTC |
| bcd5534 | nickjcroucher | 31 December 2020, 09:59:08 UTC | Change flags to autoconfigure | 31 December 2020, 09:59:08 UTC |
| 56bbd11 | nickjcroucher | 31 December 2020, 08:21:24 UTC | Remove source installations from OSX | 31 December 2020, 08:21:24 UTC |
| afa3a79 | nickjcroucher | 31 December 2020, 06:50:40 UTC | Change gubbins make flags for OSX | 31 December 2020, 06:50:40 UTC |
