Revision e8e54d723f9b651e8995a09ee272776fc38ddc02 authored by Yu-Chi Chen on 06 May 2022, 07:11:31 UTC, committed by GitHub on 06 May 2022, 07:11:31 UTC
1 parent e73ba4f
README.md
Shield: [![CC BY-NC-SA 4.0][cc-by-nc-sa-shield]][cc-by-nc-sa]
This work is licensed under a
[Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License][cc-by-nc-sa].
[![CC BY-NC-SA 4.0][cc-by-nc-sa-image]][cc-by-nc-sa]
[cc-by-nc-sa]: http://creativecommons.org/licenses/by-nc-sa/4.0/
[cc-by-nc-sa-image]: https://licensebuttons.net/l/by-nc-sa/4.0/88x31.png
[cc-by-nc-sa-shield]: https://img.shields.io/badge/License-CC%20BY--NC--SA%204.0-lightgrey.svg
# Shape-Asymmetry-Signature
This repository provides scripts for the analysis in "The individuality of shape asymmetries of the human cerebral cortex".
See https://www.biorxiv.org/content/10.1101/2021.09.14.460242v2 for details.
Python code will be provided soon.
For the heritability analysis, also see
Arnatkeviciute. A. et al., Genetic influences on hub connectivity of the human connectome. Nat Commun 12, 4237 (2021).
https://www.nature.com/articles/s41467-021-24306-2
Dependances:
1. gifti toolbox (https://github.com/gllmflndn/gifti.git): this toolbox is used when generating functional connectivity
2. PALM (Permutation Analysis of Linear Models; https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM): this toolbox keep subjects' family structures intac when shuffling the subjects.
3. Permutation Inference for Canonical Correlation Analysis (https://github.com/andersonwinkler/PermCCA)
4. toolbox of correcting p-values for multiple comparison (https://au.mathworks.com/matlabcentral/fileexchange/61659-multicmp)
For the Shape-DNA analysis that appied in our study, please check http://reuter.mit.edu/software/shapedna/ and see the relevant papers:
1. M. Reuter, F.-E. Wolter, N. Peinecke, Laplace–Beltrami spectra as ‘Shape-DNA’ of surfaces and solids. Computer-Aided Design 38, 342-366 (2006). https://doi.org/10.1016/j.cad.2005.10.011
2. M. Reuter, F. E. Wolter, M. Shenton, M. Niethammer, Laplace-Beltrami Eigenvalues and Topological Features of Eigenfunctions for Statistical Shape Analysis. Comput Aided Des 41, 739-755 (2009). https://doi.org/10.1016/j.cad.2009.02.007
![swh spinner](/static/img/swh-spinner.gif)
Computing file changes ...