Revision e9275c2749d590998082da0544957d33c28d59e5 authored by Mark van der Wilk on 03 May 2017, 17:08:06 UTC, committed by GitHub on 03 May 2017, 17:08:06 UTC
* Add regression test for NaNs in gradient * Fix NaN in gradient if cos_theta is close to one * Use jitter close to machine epsilon
1 parent 5190ada
test_notebooks.py
from __future__ import print_function
import nbformat
from nbconvert.preprocessors import ExecutePreprocessor
from nbconvert.preprocessors.execute import CellExecutionError
import glob
import traceback
import unittest
import sys
import time
import os
class TestNotebooks(unittest.TestCase):
def _execNotebook(self, ep, notebook_filename, nbpath):
with open(notebook_filename) as f:
nb = nbformat.read(f, as_version=nbformat.current_nbformat)
try:
out = ep.preprocess(nb, {'metadata': {'path': nbpath}})
except CellExecutionError:
print('-' * 60)
traceback.print_exc(file=sys.stdout)
print('-' * 60)
self.assertTrue(False, 'Error executing the notebook %s. See above for error.' % notebook_filename)
def test_all_notebooks(self):
''' Test all notebooks except blacklist. Blacklisted notebooks take too long.'''
blacklist = ['svi_test.ipynb']
pythonkernel = 'python'+str(sys.version_info[0])
nbpath = '../doc/source/notebooks/'
# see http://nbconvert.readthedocs.io/en/stable/execute_api.html
ep = ExecutePreprocessor(timeout=120, kernel_name=pythonkernel, interrupt_on_timeout=True)
lfiles = glob.glob(nbpath+"*.ipynb")
for notebook_filename in lfiles:
if(os.path.basename(notebook_filename) not in blacklist):
t = time.time()
self._execNotebook(ep, notebook_filename, nbpath)
print(notebook_filename, 'took %g seconds.' % (time.time()-t))
if __name__ == '__main__':
unittest.main()
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