Revision e9558dc11b31b908f3af142e403d33e91d417b8a authored by Albert Tian Chen on 24 January 2021, 10:43:42 UTC, committed by Albert Tian Chen on 24 January 2021, 10:43:42 UTC
1 parent 86cf54a
environment.yml
name: covid-cg
channels:
- conda-forge
- defaults
- bioconda
dependencies:
- python=3.8.3
- numpy=1.18.5
- pandas=1.0.5
- xlrd=1.2.0
- bowtie2=2.4.1
- pip=20.1.1
- snakemake=5.20.1
- samtools=1.10
- pip:
- pysam==0.15.4
# For cloud function development
- functions-framework==2.0.0
- google-cloud-storage==1.29.0
# If you want to run the notebooks:
- jupyter=1.0.0
- jupyter_contrib_nbextensions=0.5.1
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