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Revision f1ac2c9b3cde7f47d5897da41fa82146e7670f84 authored by Thomas Mooney on 05 March 2014, 16:42:54 UTC, committed by Thomas Mooney on 05 March 2014, 16:42:54 UTC 
Only examine the first 1000 lines of the BAM when discerning read length.
 
Otherwise for large BAMs this process takes a *long* time without much
gain in accuracy.
1 parent 1ddec2d
History
File Mode Size
alignment_summary @ 8932081
bam-readcount @ c044123
bam-window @ 572bfaf
bassovac @ 41b7bc4
bin
bmm @ 311e4d9
breakdancer @ 8f07f3d
configuration-manager @ f719544
copyCat @ 78b25a7
cron @ 584bc07
fqgrep @ fe0206d
genome-db-cosmic @ bdec904
genome-db-omim @ d9b949a
genome-db-pfam @ e5acfb0
genome-music
genome-music-testdata @ 860ea75
genome-snapshot-deps @ c3f7f08
genome-snapshot-testdata @ 72c0ded
genome-sys-user
genome-webserver
genome-www
getopt-complete @ 95e944c
gms-config @ 6ccaa62
gmt-sys-vmbuilder
graphite @ ac4c603
hooks
init
jenkins @ ad9380d
joinx @ e83e763
lib
pairoscope @ 5fdcd27
sciClone @ 723cadc
scripts
sff2fastq @ b815f97
somatic-sniper @ b83aab3
sqitch
tgi-etc @ 08ba1a6
tigra @ 6fe6b74
tigra-sv @ 715dda8
ur @ b0d8d06
varscan @ 83ae9d8
vendor
workflow @ 4332dce
.gitignore -rw-r--r-- 302 bytes
.gitmodules -rw-r--r-- 9.5 KB
.mailmap -rw-r--r-- 301 bytes
.test-tracker.conf -rw-r--r-- 329 bytes
LICENSE -rw-r--r-- 7.5 KB
README -rw-r--r-- 155 bytes
WHERE_TO_PUT_CODE -rw-r--r-- 2.4 KB
create-c-project.sh -rwxr-xr-x 2.9 KB
create-project -rwxr-xr-x 2.9 KB
test-data-relocate-me l--------- 46 bytes

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