| f1b2593 | Paul Hoffman | 14 January 2022, 18:54:41 UTC | Merge pull request #5502 from satijalab/develop Seurat v4.1.0 | 14 January 2022, 18:54:41 UTC |
| 5656a64 | Paul Hoffman | 14 January 2022, 17:46:01 UTC | Merge pull request #5497 from satijalab/release/4.1.0 Prep release of 4.1.0 | 14 January 2022, 17:46:01 UTC |
| 0d211e5 | Paul Hoffman | 13 January 2022, 20:39:07 UTC | Fix CRAN notes | 13 January 2022, 20:39:07 UTC |
| b931ce7 | Paul Hoffman | 13 January 2022, 20:36:54 UTC | Merge branch 'develop' into release/4.1.0 | 13 January 2022, 20:36:54 UTC |
| 4a05e24 | Paul Hoffman | 13 January 2022, 20:35:43 UTC | Merge pull request #604 from satijalab/fix/FeaturePlot_scaling fix scaling options in FeaturePlot when using split.by | 13 January 2022, 20:35:43 UTC |
| b43417b | Paul Hoffman | 13 January 2022, 20:35:12 UTC | Merge branch 'develop' into fix/FeaturePlot_scaling | 13 January 2022, 20:35:12 UTC |
| 2173739 | Paul Hoffman | 13 January 2022, 20:15:08 UTC | Finish merge | 13 January 2022, 20:15:08 UTC |
| 71feba8 | Paul Hoffman | 13 January 2022, 20:14:15 UTC | Update dates | 13 January 2022, 20:14:15 UTC |
| aeeed4a | Paul Hoffman | 13 January 2022, 20:10:28 UTC | Update NEWS.md | 13 January 2022, 20:10:28 UTC |
| 9e1fbcb | Paul Hoffman | 13 January 2022, 20:10:04 UTC | Update README | 13 January 2022, 20:10:04 UTC |
| 2d86c3f | Paul Hoffman | 13 January 2022, 20:08:36 UTC | Update CRAN comments | 13 January 2022, 20:08:36 UTC |
| f9da710 | Paul Hoffman | 13 January 2022, 20:08:27 UTC | Update changelog | 13 January 2022, 20:08:27 UTC |
| b9642f4 | Paul Hoffman | 13 January 2022, 20:08:21 UTC | Bump version | 13 January 2022, 20:08:21 UTC |
| 743ba7a | Paul Hoffman | 13 January 2022, 20:04:37 UTC | Merge pull request #620 from satijalab/fix/sct2test_reg Fix SCT2 tests, add documentation | 13 January 2022, 20:04:37 UTC |
| 1c17f7b | Saket Choudhary | 13 January 2022, 19:18:00 UTC | Depend on sctransform 0.3.3 | 13 January 2022, 19:18:00 UTC |
| ec58e7b | Saket Choudhary | 13 January 2022, 18:51:40 UTC | Fix documentation | 13 January 2022, 18:51:40 UTC |
| 47cc514 | Saket Choudhary | 13 January 2022, 18:35:51 UTC | Use old RNGversion for SCT tests | 13 January 2022, 18:35:51 UTC |
| d58ccfb | Saket Choudhary | 13 January 2022, 18:01:45 UTC | Fix sct tests | 13 January 2022, 18:01:45 UTC |
| b730114 | Paul Hoffman | 12 January 2022, 22:42:23 UTC | Merge pull request #619 from satijalab/fix/mastde Fix MAST DE test | 12 January 2022, 22:42:23 UTC |
| 833e1b2 | Paul Hoffman | 12 January 2022, 22:41:56 UTC | Bump develop version, prep for v4.1 | 12 January 2022, 22:41:56 UTC |
| 371881c | Paul Hoffman | 12 January 2022, 22:41:04 UTC | Update changelog | 12 January 2022, 22:41:04 UTC |
| 3be11ea | Saket Choudhary | 11 January 2022, 22:47:28 UTC | Update vignette organization | 11 January 2022, 22:47:28 UTC |
| 2ba3fcd | Saket Choudhary | 11 January 2022, 21:12:57 UTC | Update sct2 vignette image | 11 January 2022, 21:12:57 UTC |
| 1b11552 | Saket Choudhary | 11 January 2022, 13:06:50 UTC | Fix MAST DE test | 11 January 2022, 13:06:50 UTC |
| dc6a8e4 | Paul Hoffman | 10 January 2022, 22:37:14 UTC | Merge pull request #618 from satijalab/fix/sct2_umi Fix log_umi in attributes | 10 January 2022, 22:37:14 UTC |
| abf6840 | Saket Choudhary | 10 January 2022, 22:35:15 UTC | Fix log_umi in attributes | 10 January 2022, 22:35:15 UTC |
| 0b48323 | Paul Hoffman | 10 January 2022, 22:29:52 UTC | Merge pull request #617 from satijalab/fix/sct2_vignette Updates for sct v2 vignette | 10 January 2022, 22:29:52 UTC |
| 7e0bb96 | Saket Choudhary | 10 January 2022, 22:27:32 UTC | Merge branch 'fix/sct2_vignette' of github.com:satijalab/seurat-private into fix/sct2_vignette | 10 January 2022, 22:27:32 UTC |
| accc401 | Saket Choudhary | 10 January 2022, 22:27:00 UTC | Add sct2 vignette to get started | 10 January 2022, 22:27:00 UTC |
| e23fe2d | Paul Hoffman | 10 January 2022, 22:18:00 UTC | Update objects.R | 10 January 2022, 22:18:00 UTC |
| d40141c | Saket Choudhary | 10 January 2022, 20:04:41 UTC | Fix sct2 example and tests | 10 January 2022, 20:04:41 UTC |
| 5383cb5 | Paul Hoffman | 10 January 2022, 18:51:13 UTC | Merge pull request #616 from satijalab/fix/Update_SCT_assay fix sct update | 10 January 2022, 18:51:13 UTC |
| 99f36a6 | Paul Hoffman | 10 January 2022, 18:50:50 UTC | Update preprocessing.R | 10 January 2022, 18:50:50 UTC |
| 6e3c214 | Saket Choudhary | 08 January 2022, 22:16:10 UTC | SCT v2 vignette updates | 08 January 2022, 22:16:10 UTC |
| 5a734f4 | yuhanH | 08 January 2022, 04:46:35 UTC | fix sct update | 08 January 2022, 04:46:35 UTC |
| e9d37aa | Paul Hoffman | 07 January 2022, 22:58:10 UTC | Merge pull request #615 from satijalab/feat/prepsctmarkers Add PrepSCTFindMarkers | 07 January 2022, 22:58:10 UTC |
| c782f96 | Paul Hoffman | 07 January 2022, 22:57:40 UTC | Update changelog | 07 January 2022, 22:57:40 UTC |
| d92eb88 | Paul Hoffman | 07 January 2022, 22:56:10 UTC | Bump develop version Automatically install satijalab/sctransform@develop | 07 January 2022, 22:56:10 UTC |
| 4cfa047 | Paul Hoffman | 07 January 2022, 22:55:36 UTC | Merge branch 'develop' into feat/prepsctmarkers | 07 January 2022, 22:55:36 UTC |
| d4c81fe | Saket Choudhary | 07 January 2022, 18:31:10 UTC | Fix conflicts | 07 January 2022, 18:31:10 UTC |
| 65f743e | Saket Choudhary | 07 January 2022, 18:08:41 UTC | Add FindMarkers.SCTAssay | 07 January 2022, 18:08:41 UTC |
| 937180e | yuhanH | 07 January 2022, 01:42:16 UTC | update docu | 07 January 2022, 01:42:16 UTC |
| bbf2685 | yuhanH | 06 January 2022, 21:53:45 UTC | update style | 06 January 2022, 21:53:45 UTC |
| 9db8fd5 | Paul Hoffman | 06 January 2022, 00:43:33 UTC | Merge pull request #5446 from satijalab/fix/update-parse ReadParseBio function update | 06 January 2022, 00:43:33 UTC |
| 9100c4a | Paul Hoffman | 06 January 2022, 00:42:25 UTC | Update changelog | 06 January 2022, 00:42:25 UTC |
| e64e7f4 | Paul Hoffman | 06 January 2022, 00:42:18 UTC | Bump develop version | 06 January 2022, 00:42:18 UTC |
| 183d1aa | Saket Choudhary | 06 January 2022, 00:23:47 UTC | document | 06 January 2022, 00:23:47 UTC |
| 0c025e6 | Saket Choudhary | 06 January 2022, 00:21:26 UTC | Handle old seurat objects; update vignette | 06 January 2022, 00:21:26 UTC |
| d3c3113 | Efi Papalexi | 05 January 2022, 23:07:39 UTC | fixed function to be compatible with latest split-pipe 0.9.6p output files | 05 January 2022, 23:07:39 UTC |
| 174858c | Saket Choudhary | 25 December 2021, 21:43:23 UTC | Add PrepSCTFindMarkers; sct2 vignette | 03 January 2022, 16:14:07 UTC |
| d23bf67 | Saket Choudhary | 17 December 2021, 20:45:32 UTC | Merge pull request #5392 from samuel-marsh/raster_dpi2 Add raster.dpi param for geom_scattermore (updated branch) | 17 December 2021, 20:45:32 UTC |
| c6932a6 | Saket Choudhary | 17 December 2021, 20:17:20 UTC | Remove object file | 17 December 2021, 20:17:20 UTC |
| 226bef9 | Saket Choudhary | 17 December 2021, 18:46:40 UTC | Update documentation; Bump version | 17 December 2021, 18:46:40 UTC |
| 06ee47e | Saket Choudhary | 17 December 2021, 18:38:51 UTC | xMerge remote-tracking branch 'upstream/develop' into raster_dpi2 | 17 December 2021, 18:38:51 UTC |
| d612d46 | Saket Choudhary | 17 December 2021, 18:38:14 UTC | Update documentation | 17 December 2021, 18:38:14 UTC |
| 8da35ba | Paul Hoffman | 16 December 2021, 17:00:26 UTC | Merge pull request #5399 from satijalab/develop Seurat v4.0.6 | 16 December 2021, 17:00:26 UTC |
| 5a99976 | Paul Hoffman | 16 December 2021, 16:18:46 UTC | Merge pull request #5396 from satijalab/release/4.0.6 Prep release of 4.0.6 | 16 December 2021, 16:18:46 UTC |
| 288f5c0 | Paul Hoffman | 16 December 2021, 16:18:24 UTC | Update CRAN comments | 16 December 2021, 16:18:24 UTC |
| 85fbc29 | Paul Hoffman | 16 December 2021, 15:58:37 UTC | Bump version | 16 December 2021, 15:58:37 UTC |
| 88fc54d | samuel-marsh | 15 December 2021, 23:02:09 UTC | add param raster.dpi for geom_scattermore (updated branch) | 15 December 2021, 23:02:09 UTC |
| 9efc44d | Paul Hoffman | 14 December 2021, 20:25:06 UTC | Merge pull request #612 from satijalab/fix/ProjectUMAP_n_neighbors Fix ProjectUMAP num of neighbors error and warnings | 14 December 2021, 20:25:06 UTC |
| b42f1a1 | Paul Hoffman | 14 December 2021, 20:24:41 UTC | Update changelog Bump develop version | 14 December 2021, 20:24:41 UTC |
| 193ddc2 | Paul Hoffman | 14 December 2021, 20:22:57 UTC | Merge branch 'develop' into fix/ProjectUMAP_n_neighbors | 14 December 2021, 20:22:57 UTC |
| c720005 | Paul Hoffman | 14 December 2021, 19:27:37 UTC | Merge pull request #605 from satijalab/feat/sLSI supervised LSI | 14 December 2021, 19:27:37 UTC |
| 393ec7d | Paul Hoffman | 14 December 2021, 19:27:06 UTC | Update changelog Bump develop version | 14 December 2021, 19:27:06 UTC |
| 015a7dd | Paul Hoffman | 14 December 2021, 19:26:19 UTC | Merge branch 'develop' into feat/sLSI | 14 December 2021, 19:26:19 UTC |
| 8485f2a | Paul Hoffman | 14 December 2021, 19:25:06 UTC | Merge branch 'develop' of github.com:satijalab/seurat into develop | 14 December 2021, 19:25:06 UTC |
| 6a920f5 | yuhanH | 13 December 2021, 01:22:24 UTC | add ... in default | 13 December 2021, 01:22:24 UTC |
| 678c6d9 | yuhanH | 11 December 2021, 19:57:40 UTC | replace do.call with invoke | 11 December 2021, 19:57:40 UTC |
| 0eb44d8 | yuhanH | 11 December 2021, 19:33:33 UTC | set k.nn based on reference nn num | 11 December 2021, 19:33:33 UTC |
| 61cca80 | yuhanH | 11 December 2021, 19:25:46 UTC | add warning | 11 December 2021, 19:25:46 UTC |
| ea83c2d | yuhanH | 11 December 2021, 19:21:02 UTC | fix IntegrateEmbeddings.transfer warnings | 11 December 2021, 19:21:02 UTC |
| 9cb461b | yuhanH | 11 December 2021, 19:12:34 UTC | fix project umap assay warning | 11 December 2021, 19:12:34 UTC |
| e7b1fa8 | yuhanH | 11 December 2021, 18:29:01 UTC | change default k to 30 | 11 December 2021, 18:29:01 UTC |
| d6567ea | yuhanH | 11 December 2021, 06:03:55 UTC | fix some docu | 11 December 2021, 06:03:55 UTC |
| 6429767 | yuhanH | 11 December 2021, 05:57:09 UTC | remove sparseMatrixStats | 11 December 2021, 05:57:09 UTC |
| cd35c15 | yuhanH | 11 December 2021, 05:48:15 UTC | add sparse row warpper | 11 December 2021, 05:48:15 UTC |
| a3ea475 | timoast | 10 December 2021, 19:29:24 UTC | Update license | 10 December 2021, 19:29:24 UTC |
| db95fd7 | Avi Srivastava | 10 December 2021, 19:26:42 UTC | Update stats.cpp | 10 December 2021, 19:26:42 UTC |
| c50ff02 | yuhanH | 10 December 2021, 18:05:35 UTC | add c++ functions | 10 December 2021, 18:05:35 UTC |
| 8ebb179 | yuhanH | 10 December 2021, 18:04:07 UTC | add row operations from avi | 10 December 2021, 18:04:07 UTC |
| 8e7e610 | timoast | 07 December 2021, 16:27:33 UTC | Update docs | 07 December 2021, 16:27:33 UTC |
| d81e5b2 | yuhanH | 06 December 2021, 17:50:47 UTC | remove project parameter | 06 December 2021, 17:50:47 UTC |
| e4d4539 | timoast | 05 December 2021, 18:21:30 UTC | Update SLSI generic | 05 December 2021, 18:21:30 UTC |
| 7ccd4c9 | timoast | 05 December 2021, 18:21:13 UTC | Update docs | 05 December 2021, 18:21:13 UTC |
| bbba8dc | timoast | 05 December 2021, 18:20:38 UTC | Clean up code and documentation | 05 December 2021, 18:20:38 UTC |
| 6126fa0 | Paul Hoffman | 04 December 2021, 17:41:40 UTC | Merge pull request #5083 from satijalab/feat/export Export utility functions | 04 December 2021, 17:41:40 UTC |
| a146d36 | Paul Hoffman | 03 December 2021, 23:25:22 UTC | Merge branch 'feat/export' of github.com:satijalab/seurat into feat/export | 03 December 2021, 23:25:22 UTC |
| 42a8023 | Paul Hoffman | 03 December 2021, 23:24:36 UTC | Add concepts to new docs | 03 December 2021, 23:24:36 UTC |
| 07ae97c | timoast | 03 December 2021, 23:19:22 UTC | remove extra line | 03 December 2021, 23:19:22 UTC |
| 24d51f8 | Paul Hoffman | 03 December 2021, 21:51:13 UTC | Adjust imports | 03 December 2021, 22:03:34 UTC |
| d7ac89b | Paul Hoffman | 03 December 2021, 21:52:14 UTC | Merge pull request #608 from satijalab/doc/extensions Update extensions page | 03 December 2021, 21:52:14 UTC |
| 780d935 | Paul Hoffman | 03 December 2021, 21:46:11 UTC | Update required SeuratObject version | 03 December 2021, 21:46:11 UTC |
| c32a5de | Paul Hoffman | 03 December 2021, 21:44:51 UTC | Merge branch 'develop' into feat/export | 03 December 2021, 21:44:51 UTC |
| 2ef0427 | Paul Hoffman | 03 December 2021, 21:40:04 UTC | Merge branch 'develop' of github.com:satijalab/seurat into develop | 03 December 2021, 21:40:04 UTC |
| 34de4f6 | Tim Stuart | 03 December 2021, 21:25:40 UTC | Merge pull request #607 from satijalab/doc/reexport Add reexported functions to website reference | 03 December 2021, 21:25:40 UTC |
| 60bee68 | Tim Stuart | 03 December 2021, 21:21:03 UTC | Merge pull request #599 from satijalab/feat/docsearch Add docsearch to website | 03 December 2021, 21:21:03 UTC |
| 0194fd4 | Paul Hoffman | 03 December 2021, 20:23:39 UTC | Merge pull request #5314 from samuel-marsh/featureplot_labelcolor `FeaturePlot` Add label.color param | 03 December 2021, 20:23:39 UTC |
| 3656475 | Paul Hoffman | 03 December 2021, 20:22:59 UTC | Bump develop version Update changelog | 03 December 2021, 20:22:59 UTC |
| dc83c3a | Paul Hoffman | 03 December 2021, 20:22:12 UTC | Merge branch 'develop' into featureplot_labelcolor | 03 December 2021, 20:22:12 UTC |
